Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E08
         (493 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    26   0.16 
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    23   1.5  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   6.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 392 PRSYRGSTRRLRHFYSNVVKLYFKS 466
           P+SY G+T  L+ FY  V K+  +S
Sbjct: 57  PKSYFGTTTNLKRFYKVVEKILTQS 81


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 392 PRSYRGSTRRLRHFY 436
           P+SY G+T  L+ FY
Sbjct: 57  PKSYFGTTTNLKRFY 71


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 32  PYKCKLC 12
           PY+CKLC
Sbjct: 105 PYECKLC 111


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 32  PYKCKLC 12
           PY+CKLC
Sbjct: 361 PYECKLC 367


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 331 DGLYYHWLFVGQQKL 375
           DG+  HW + G +K+
Sbjct: 291 DGMDIHWEYPGAEKM 305


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,391
Number of Sequences: 336
Number of extensions: 2252
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)