Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_E07
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 265 4e-72
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 122 6e-29
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 120 1e-28
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 111 6e-26
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 93 4e-20
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 92 7e-20
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 90 2e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 87 3e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 84 1e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 81 1e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 77 2e-15
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 77 2e-15
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 75 1e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 74 2e-14
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 73 4e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 68 1e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 67 2e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 63 3e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 63 4e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 62 7e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 58 1e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 56 3e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 7e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 46 5e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 46 5e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 44 2e-05
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 35 0.009
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 35 0.009
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 34 0.015
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 30 0.25
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 30 0.25
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.76
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 3.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 4.0
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 26 4.0
SPBP22H7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.3
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 9.3
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 265 bits (649), Expect = 4e-72
Identities = 125/197 (63%), Positives = 153/197 (77%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXLDVLEF 465
S TLS EIRP+CKKFMQ+P+E+YVDDE KL HGLQQHYV LD LEF
Sbjct: 236 SATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEF 295
Query: 464 NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLF 285
NQVVIFVKSV R L +LL + NFP+I IH + Q+ER+ RY+ FKDF KRI VAT++F
Sbjct: 296 NQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVF 355
Query: 284 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQDRF 105
GRG+DIERVNIV NYDMP+ D+YLHRV RAGRFGTKGLAIT S E D++IL+++Q+RF
Sbjct: 356 GRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERF 415
Query: 104 DVNITELPEEIELSTYI 54
+VNITELP+EI++ +Y+
Sbjct: 416 EVNITELPDEIDVGSYM 432
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 122 bits (293), Expect = 6e-29
Identities = 61/192 (31%), Positives = 108/192 (56%), Gaps = 1/192 (0%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXL-DVLE 468
S TL +++ + KF +P+ + V + +L GL+Q+++ L D L
Sbjct: 201 SATLPQDVLEMTNKFTTNPVRILVKRD-ELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLT 259
Query: 467 FNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNL 288
Q VIF S ++ L + + + NF +H M Q ER + Q F+ R+L+ T++
Sbjct: 260 ITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDI 319
Query: 287 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQDR 108
+ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG KG+AI +++E D +IL ++
Sbjct: 320 WARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNE-DVRILRDIEQY 378
Query: 107 FDVNITELPEEI 72
+ I E+P I
Sbjct: 379 YSTVIDEMPMNI 390
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 120 bits (290), Expect = 1e-28
Identities = 58/192 (30%), Positives = 113/192 (58%), Gaps = 1/192 (0%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXL-DVLE 468
S T+ +++ V KFM+DP+ + V + +L G++Q YV L + +
Sbjct: 199 SATMPQDVLEVTTKFMRDPIRILVKKD-ELTLEGIKQFYVAVEKEEWKLDTLCDLYETVT 257
Query: 467 FNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNL 288
Q VIF + ++ L + LT+++F +H +M Q +R + +F+ RIL+ T+L
Sbjct: 258 VTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDL 317
Query: 287 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQDR 108
RG+D+++V++V NYD+P + + Y+HR+ R GRFG KG++I ++++ D +++ +++
Sbjct: 318 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTND-DVRMMREIEQF 376
Query: 107 FDVNITELPEEI 72
++ +I E+P I
Sbjct: 377 YNTHIEEMPMNI 388
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 111 bits (268), Expect = 6e-26
Identities = 63/197 (31%), Positives = 101/197 (51%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXLDVLEF 465
S T ++ K + P E+ + DE L+ G+ Q+Y L+
Sbjct: 224 SATFPLIVKNFMDKHLNKPYEINLMDELTLR--GVTQYYAFVDESQKVHCLNTLFSKLQI 281
Query: 464 NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLF 285
NQ +IF S R LA+ +T+ + H M Q R + F++ R LV ++L
Sbjct: 282 NQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341
Query: 284 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQDRF 105
RG+DI+ VN+V N+D P++++TYLHR+ R+GRFG +GLAI+ IS D L ++++
Sbjct: 342 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS-WADRFNLYRIENEL 400
Query: 104 DVNITELPEEIELSTYI 54
I +P I+ S Y+
Sbjct: 401 GTEIQPIPPSIDPSLYV 417
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 92.7 bits (220), Expect = 4e-20
Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 7/197 (3%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXL-DVLE 468
S T S+ + ++F + E+ + E +L G++Q Y+ L +L
Sbjct: 293 SATFSERVEKYAERFAPNANEIRLKTE-ELSVEGIKQLYMDCQSEEHKYNVLVELYGLLT 351
Query: 467 FNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNL 288
Q +IF K +A+ +T + N+ +R + F+ ++LV TN+
Sbjct: 352 IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNV 411
Query: 287 FGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRFGTKGLAITMISDENDAKIL 126
RG+D+ +VN+V NYDMP D TYLHR+ R GRFG G++I + D+ + +
Sbjct: 412 IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEM 471
Query: 125 NQVQDRFDVNITELPEE 75
N +Q+ F IT +P +
Sbjct: 472 NAIQEYFQRPITRVPTD 488
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 91.9 bits (218), Expect = 7e-20
Identities = 51/165 (30%), Positives = 83/165 (50%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXLDVLEF 465
S T++ ++ + + + P+ V V + L Q Y+ ++ L
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAVSSKFST-VDTLIQRYLFFPFKHKDTYLVYLVNELAG 285
Query: 464 NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLF 285
N ++IF ++V LA LL F AI +H ++Q RL +FK + LVAT++
Sbjct: 286 NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVA 345
Query: 284 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS 150
RG+DI V++V NYD+P DS Y+HRV R R G G +I +++
Sbjct: 346 ARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVT 390
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 90.2 bits (214), Expect = 2e-19
Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 3/202 (1%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHY-VXXXXXXXXXXXXXXLDVLE 468
S T KE++ + + ++ D ++V V H ++Q V +VL+
Sbjct: 307 SATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLK 366
Query: 467 F--NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVAT 294
N+V+IF + + + + L +PA+ IH + QDER +F+ + I+VAT
Sbjct: 367 DRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVAT 426
Query: 293 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQ 114
++ RG+D++ + VFNYD P +++ Y+HR+ R GR G KG A T + +N + V
Sbjct: 427 DVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVS 486
Query: 113 DRFDVNITELPEEIELSTYIEG 48
+ P+ E++ Y G
Sbjct: 487 ILSEAKQDIDPKLEEMARYSSG 508
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 86.6 bits (205), Expect = 3e-18
Identities = 42/105 (40%), Positives = 59/105 (56%)
Frame = -1
Query: 455 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 276
+IFV++ + L L + NFPA IH + TQ ER + F+ + I+VAT + RG
Sbjct: 434 LIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRG 493
Query: 275 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 141
+DI V V NYD+P D D Y+HR+ R GR G G A+ + N
Sbjct: 494 LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNN 538
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 84.2 bits (199), Expect = 1e-17
Identities = 40/123 (32%), Positives = 69/123 (56%)
Frame = -1
Query: 455 VIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRG 276
+IFV + + +L +H M Q ER++ +F+ +ILVAT++ RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 275 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQDRFDVN 96
+DI V +V N+D+P D D Y+HRV R R G G +I++++ E D +++ ++DR
Sbjct: 322 LDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT-ERDVDLVHAIEDRVGTK 380
Query: 95 ITE 87
++E
Sbjct: 381 LSE 383
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 81.0 bits (191), Expect = 1e-16
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Frame = -1
Query: 479 DVLEFNQ----VVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQK 312
++LE N+ ++IFV + A+A+ L + A+ +H + +Q++R +Q ++
Sbjct: 508 EILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTA 567
Query: 311 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 141
ILVAT++ GRG+DI V++V NY+M + + Y HR+ R GR G G AIT + E+
Sbjct: 568 DILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPED 624
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 77.4 bits (182), Expect = 2e-15
Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 3/190 (1%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDDEAKLKXHGLQQHYVXXXXXXXXXXXXXXLDV--- 474
S T++ ++ + + + P+ V+VD++ K L Q +V + +
Sbjct: 443 SATMTDKVDDLIRLSLNRPVRVFVDNK-KTTAKLLTQEFVRVRPQRELLRPAMLIYLCKE 501
Query: 473 LEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVAT 294
L + +IF +S + + + A IH +++Q++R+ + F+D + L+AT
Sbjct: 502 LFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLAT 561
Query: 293 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQ 114
++ RG+DI+ + +V NY+ P + YLHRV R R G G AIT ++ E D K+L V
Sbjct: 562 DVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAIT-LAGEGDRKVLKGVF 620
Query: 113 DRFDVNITEL 84
T+L
Sbjct: 621 KNSSAQNTKL 630
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 77.4 bits (182), Expect = 2e-15
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = -1
Query: 461 QVVIFVKSVQRCIAL-AQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLF 285
+VVIFV+ ++R AL +LL D+ + IH + Q +R +F+ + +L+AT+L
Sbjct: 290 RVVIFVQDIERAKALYTELLFDEIHVGV-IHGELPQAKREEALAKFRKGEIWVLIATDLL 348
Query: 284 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 141
RG+D V +V N+D P+ +Y+HR+ R GR G G A+T + E+
Sbjct: 349 ARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKED 396
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 74.5 bits (175), Expect = 1e-14
Identities = 38/131 (29%), Positives = 69/131 (52%)
Frame = -1
Query: 461 QVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFG 282
+ ++FV + AL L + + + IH Q +R S +K +L+AT++
Sbjct: 670 RTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVA 729
Query: 281 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQDRFD 102
RG+D++ + +V NYD P + Y+HRV R GR G G+A+T I+ E + K +
Sbjct: 730 RGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQE-KYAVDIAKALK 788
Query: 101 VNITELPEEIE 69
++ +P+E++
Sbjct: 789 MSKQPVPKELQ 799
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 74.1 bits (174), Expect = 2e-14
Identities = 37/108 (34%), Positives = 61/108 (56%)
Frame = -1
Query: 464 NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLF 285
++++IFV + + L + + +GIH +M+Q RL FK + +LVAT++
Sbjct: 418 DKILIFVLYKKEAARVEGTLA-RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVA 476
Query: 284 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDEN 141
RG+DI +V +V N P + Y+HR+ R GR TKG AIT + ++
Sbjct: 477 ARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQD 524
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 72.9 bits (171), Expect = 4e-14
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 1/141 (0%)
Frame = -1
Query: 590 PMEVYVDD-EAKLKXHGLQQHYVXXXXXXXXXXXXXXLDVLEFNQVVIFVKSVQRCIALA 414
P+ V VD + GL+Q YV L +V++F+ S +A
Sbjct: 294 PLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMA 353
Query: 413 QLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDM 234
+LL + P + +H Q R + + +F + +K IL+ TN+ RG+DI V+ + YD
Sbjct: 354 ELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDP 413
Query: 233 PEDSDTYLHRVARAGRFGTKG 171
P+D Y+HRV R R GTKG
Sbjct: 414 PDDPRDYIHRVGRTAR-GTKG 433
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 67.7 bits (158), Expect = 1e-12
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Frame = -1
Query: 473 LEFNQVVIFVKSVQRCIALAQLLTDQNFP--AIGIHRNMTQDERLSRYQQFKDFQKR-IL 303
+E+ + ++F S L P + +H Q R +++FK K+ +L
Sbjct: 254 IEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVL 313
Query: 302 VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILN 123
T++ RG+DI V+ V D P D ++ HR RAGR G G+AI +++D + +
Sbjct: 314 FTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYEE 373
Query: 122 QVQDRFDVNITELPEEIE 69
++ R V IT + IE
Sbjct: 374 LLRVR-KVPITRIDTPIE 390
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.9 bits (156), Expect = 2e-12
Identities = 30/102 (29%), Positives = 54/102 (52%)
Frame = -1
Query: 461 QVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFG 282
+ ++F ++ + L + P+ +H + Q +RL ++FK+ K +LV T++
Sbjct: 391 KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAA 450
Query: 281 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITM 156
RG+DI V V +Y +P +D Y+HR R R G++I M
Sbjct: 451 RGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILM 492
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 63.3 bits (147), Expect = 3e-11
Identities = 31/114 (27%), Positives = 59/114 (51%)
Frame = -1
Query: 464 NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLF 285
+ ++FV + +++LL + I+ ++ Q+ RL+ F+ + +LV T++
Sbjct: 347 DSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVA 406
Query: 284 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILN 123
RG+DI + V NYD P ++HRV R R G G A +++ E+ +L+
Sbjct: 407 SRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLD 460
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 62.9 bits (146), Expect = 4e-11
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = -1
Query: 377 IHRNMTQDERLSRYQQF---KDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLH 207
+H +++Q R S F +D IL+ T++ RG+D+ V++V YD P +D YLH
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 206 RVARAGRFGTKGLAITMISDENDAKILNQVQDRFDVNITELP 81
R+ R R G G AI + + +++ +N ++ NI E P
Sbjct: 533 RIGRTARAGHNGAAIMFLLPK-ESEYINLLKSSVSANILEQP 573
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 62.1 bits (144), Expect = 7e-11
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Frame = -1
Query: 464 NQVVIFVKSVQRCIALAQLLTDQ-NFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNL 288
+++++F+ ++ + +L + P +H +T +R S + F+ Q IL AT++
Sbjct: 293 SRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDV 352
Query: 287 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDAKILNQVQ 114
RGMD + V P ++D Y+HR+ R GR G G A +I E + LN ++
Sbjct: 353 VARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY-LILLEQEKPFLNSIK 409
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 57.6 bits (133), Expect = 1e-09
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = -1
Query: 458 VVIFVKSVQRCIALAQLLT------DQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVA 297
++ FVKS + L +LL +Q+F ++++DER +F +LV
Sbjct: 434 ILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVC 493
Query: 296 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMI 153
++L RG+D+ V NYD P +Y+HR+ R R G +G A T++
Sbjct: 494 SDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLV 541
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 56.4 bits (130), Expect = 3e-09
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYV-DDEAKLKXHGLQQHYVXXXXXXXXXXXXXXLDV-L 471
S T +K ++ + + +Q+P + V +++ L Q Y+ + L
Sbjct: 223 SATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHL 282
Query: 470 EFNQVVIFVKSVQRCIALAQLLTDQNFPAIGI---HRNMTQDERLSRYQQFKDFQKRILV 300
+F + ++F+ S ++ + + P I + H Q R +F + +L
Sbjct: 283 KF-KTIVFLSSCKQVRFVYETFRRMR-PGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLF 340
Query: 299 ATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMISDENDA 135
T++ RG+D V+ V D PED DTY+HRV R R+ G A+ ++ +A
Sbjct: 341 CTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEA 395
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 48.8 bits (111), Expect = 7e-07
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = -1
Query: 356 DERLSRYQQFKDFQKRILVATNLFG--RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 183
DE + + K +K+ + +G RG+D E V V N+DMP ++ +Y+HR+ R R
Sbjct: 361 DESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFDMPSNTKSYIHRIGRTARA 420
Query: 182 GTKGLAITMISDEND 138
G G A++ + +++
Sbjct: 421 GKPGTAMSFVVPKSE 435
Score = 33.5 bits (73), Expect = 0.027
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Frame = -1
Query: 644 SXTLSKEIRPVCKKFMQDPMEVYVDD-EAKLKXHGLQQHYVXXXXXXXXXXXXXXLDV-L 471
S TLSK I + K ++P + V D EA K L Q+ V L + L
Sbjct: 202 SATLSKNIASLQKLVCRNPFILAVKDKEASGK---LTQYVVKCSEQDKFLLAYILLKLRL 258
Query: 470 EFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATN 291
+++IFV + RC L L ++ ++ + + RL +Q+ +I++AT+
Sbjct: 259 IKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATD 318
Query: 290 LFGRGMDIERV 258
G +IE +
Sbjct: 319 ESGMMGEIEEL 329
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 46.0 bits (104), Expect = 5e-06
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = -1
Query: 368 NMTQDERLSRYQQFKDF--QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR 195
+++ +ER + F++ + RI++AT FG G++ V +V +Y +P S Y+ R
Sbjct: 1452 DVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGR 1511
Query: 194 AGRFGTKGLAITMISDENDAKILNQVQD 111
AGR G +A + ++ D+ + V+D
Sbjct: 1512 AGRDGKYAIA-ALFYEKYDSTWSSYVED 1538
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 46.0 bits (104), Expect = 5e-06
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = -1
Query: 368 NMTQDERLSRYQQFKDF--QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR 195
+++ +ER + F++ + RI++AT FG G++ V +V +Y +P S Y+ R
Sbjct: 1452 DVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGR 1511
Query: 194 AGRFGTKGLAITMISDENDAKILNQVQD 111
AGR G +A + ++ D+ + V+D
Sbjct: 1512 AGRDGKYAIA-ALFYEKYDSTWSSYVED 1538
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 44.0 bits (99), Expect = 2e-05
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = -1
Query: 455 VIFVKSVQRCIALA-QLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGR 279
+I+ S C +A +L D A H + + ER +++ +I+VAT FG
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 278 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMIS 150
G+D V V ++ P+ + Y RAGR G I S
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYS 848
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 35.1 bits (77), Expect = 0.009
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Frame = -1
Query: 464 NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRI---LVAT 294
++ ++F + Q + L +N+ + + + D+R S QF D + + +++T
Sbjct: 1204 HKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLST 1263
Query: 293 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG-TKGLAITMISDEN--DAKILN 123
G G++++ + V +D + L RA R G TK + I + E + IL+
Sbjct: 1264 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILS 1323
Query: 122 QVQDRFDVN 96
+ Q + D++
Sbjct: 1324 RAQYKLDLD 1332
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -1
Query: 365 MTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 186
M+Q + +QF+ + L+AT++ G+DI V+++ YD L R+ R GR
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 34.3 bits (75), Expect = 0.015
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = -1
Query: 365 MTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 186
M Q ++ QF+ LVAT++ G+DI +++ YD + R+ R GR
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
Query: 185 FGTKGLAITMISDENDAK 132
+ + + + D D+K
Sbjct: 575 KKSGKVFVLLTEDCEDSK 592
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 30.3 bits (65), Expect = 0.25
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Frame = -1
Query: 461 QVVIFVKSVQRCIALAQLLTDQNFPAIGIHR------------NMTQDERLSRYQQFKDF 318
+ VIFV+ L+ + N P I H +MT + +FK
Sbjct: 363 RTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTG 422
Query: 317 QKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 168
+ +L+AT + G+D+ N+V +++ Y+ RA +K L
Sbjct: 423 KYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASKFL 472
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -3
Query: 399 PELPCHWYPQKY-DPG*ASLPLS---TIQGLPKKDLGCNKLIWPRNGH 268
P++P HWYP P P+S I LPK + N+L P + H
Sbjct: 159 PQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNH 206
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -1
Query: 305 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMI 153
++ATN G+DI ++ V P + RAGR LA+ ++
Sbjct: 614 IIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLAVYIV 664
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 26.6 bits (56), Expect = 3.1
Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Frame = -1
Query: 464 NQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRI---LVAT 294
+++++F + +Q+ L +N ++ ER S F + L++T
Sbjct: 888 HRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLST 947
Query: 293 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITMI---SDENDAKILN 123
G G+++ + V D + + +ARA R+G K + + D + KI+
Sbjct: 948 RAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQ 1007
Query: 122 QVQDR 108
Q +
Sbjct: 1008 NAQKK 1012
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 142 FSSDIIVMARPLVPNLPAR 198
+S+DI + A PLVP+LP +
Sbjct: 706 YSTDIPLKAEPLVPDLPVK 724
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 132 LGIIFIRYHSNGQTFGTKPSCAG 200
LGI +R S G TFG K AG
Sbjct: 425 LGIACVRQPSQGPTFGVKGGAAG 447
>SPBP22H7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 181
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 36 LNLSSFDVGRELNFFRQLCNVNIETILYLV*DLGIIFIRY 155
L+ F GR+LN F VNI T++ L L ++FI Y
Sbjct: 127 LHNEDFYDGRDLNIFTLRGFVNILTLILLSCGLLMLFIGY 166
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 152 SDENDAKILNQVQDRFDVNITELP 81
S E+D + L ++ D DV++++LP
Sbjct: 160 SQESDTESLPEINDSSDVSLSDLP 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,243
Number of Sequences: 5004
Number of extensions: 50908
Number of successful extensions: 157
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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