Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E06
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   122   5e-29
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    27   1.9  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   5.9  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.8  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  122 bits (294), Expect = 5e-29
 Identities = 51/68 (75%), Positives = 59/68 (86%)
 Frame = -3

Query: 685 IFVXRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYL 506
           +F  RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+++TLF YL
Sbjct: 14  LFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWDEETLFAYL 73

Query: 505 ENPKKYXP 482
           ENPKKY P
Sbjct: 74  ENPKKYIP 81



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = -1

Query: 507 LRIPRNTXPGTKMVFAGLKKANERADLIAYLKSAT 403
           L  P+   PGTKM FAG KK  +R ++I YLK AT
Sbjct: 73  LENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 464 LLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 333
           L   +R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 327 LQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 543 PLALLASEYENPAAWPVFRPKNP 611
           PL LL + +++PA W V +  NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 419 ISNLLPSNFKVIENSIRSIFHNISGIYFL 333
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 427  KVSTLICLLESSKHHLGSRXCISWDSQDIQRECRHS 534
            ++ T IC  E ++   G+   IS+D Q IQ    HS
Sbjct: 1934 QIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHS 1969


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,831
Number of Sequences: 5004
Number of extensions: 53912
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)