Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E06
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760     97   1e-20
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386...    79   2e-15
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850...    31   1.1  
03_04_0184 - 18210875-18212065                                         29   2.6  
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385     29   4.6  
04_04_1582 - 34590698-34591199,34593849-34594690                       28   6.0  
10_08_0223 - 15986763-15987575                                         28   8.0  

>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
          Length = 112

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 39/68 (57%), Positives = 50/68 (73%)
 Frame = -3

Query: 685 IFVXRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYL 506
           IF  +CAQCHTV+ G  HK GPNL+G FGR++G   G+SYS ANK   + W ++TL++YL
Sbjct: 18  IFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYL 77

Query: 505 ENPKKYXP 482
            NPKKY P
Sbjct: 78  LNPKKYIP 85



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 23/32 (71%), Positives = 25/32 (78%)
 Frame = -1

Query: 498 PRNTXPGTKMVFAGLKKANERADLIAYLKSAT 403
           P+   PGTKMVF GLKK  ERADLI+YLK AT
Sbjct: 80  PKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111


>01_06_1583 +
           38436958-38437069,38438167-38438300,38438542-38438608,
           38438900-38438937,38439302-38439391
          Length = 146

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 32/66 (48%), Positives = 44/66 (66%)
 Frame = -3

Query: 685 IFVXRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYL 506
           IF  +CA CH V+    HK GPNL+G FGR++G A GFSY   +K   + W ++TL++YL
Sbjct: 18  IFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDKIVPVIWEENTLYDYL 77

Query: 505 ENPKKY 488
             PKK+
Sbjct: 78  LTPKKH 83



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -1

Query: 474 KMVFAGLKKANERADLIAYLKSAT 403
           KM F GLK+  +RADLIAYLK+AT
Sbjct: 122 KMGFNGLKQPQDRADLIAYLKNAT 145


>10_05_0043 +
           8503979-8504407,8506484-8506624,8506865-8506975,
           8507746-8508330
          Length = 421

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 597 EKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTXPGTKMVFAGLKKANERA 433
           + L RLQDS TP P+K  +      L+ N+   P  T   T ++ A   K  + A
Sbjct: 304 KNLERLQDSITPKPVKPPSTPNTVALAANMAPDPVTTSVTTSVIPAAQTKKKKSA 358


>03_04_0184 - 18210875-18212065
          Length = 396

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 297 AEYITDHTDWAK*EVNSRNVMENASYGIFYYFKITW*QI*DR 422
           A+ I +H  WA  E  ++N   N S G  Y +K+ W  + D+
Sbjct: 258 ADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQ 299


>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
          Length = 157

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 618 FG-PTLCLPPASTVWHWAHRXTKI 686
           FG PTLCLPP +T W  A   T +
Sbjct: 21  FGMPTLCLPPIATYWSHASFKTDL 44


>04_04_1582 - 34590698-34591199,34593849-34594690
          Length = 447

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 646 AGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKY 488
           AGG  K G    G  G   G+      S+  + KGI W +D    +L   +KY
Sbjct: 238 AGGGKKGGGGGGGGGGGGHGEKGSAKSSEQERRKGIAWTEDEHRLFLLGLEKY 290


>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 643 GGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 530
           GG    G   +G +G  +G  AG  Y ++    G TWN
Sbjct: 40  GGGGGGGGGTNGGWGSGSGAGAGAGYGESGGDSGNTWN 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,042
Number of Sequences: 37544
Number of extensions: 320204
Number of successful extensions: 760
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)