Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E06
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   3.6  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.6  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   3.6  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   3.6  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.8  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 39  HIVGPRHQLMKFIANXNFL 95
           H+  PRH+L  F+A   F+
Sbjct: 169 HVTHPRHRLCVFVAGVVFI 187


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 576 PAAWPVFRPKNPCRFGPTL 632
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 576 PAAWPVFRPKNPCRFGPTL 632
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 576 PAAWPVFRPKNPCRFGPTL 632
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 576 PAAWPVFRPKNPCRFGPTL 632
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 576 PAAWPVFRPKNPCRFGPTL 632
           P ++P F P N  RF P+L
Sbjct: 370 PTSFPRFIPPNAYRFRPSL 388


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 216 IHMYLVHNVLCDVIYTLLTM 157
           IH+ L+H  + D++ T L M
Sbjct: 73  IHIMLMHLAIADLLVTFLMM 92


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 262 VSSKSQHNHLQLLFVNTYVPG 200
           + +K++ +H+Q L  NT  PG
Sbjct: 167 LKTKNECDHVQFLITNTSGPG 187


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 262 VSSKSQHNHLQLLFVNTYVPG 200
           + +K++ +H+Q L  NT  PG
Sbjct: 167 LKTKNECDHVQFLITNTSGPG 187


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 637 KHKVGPNLHGFFGRKTGQAAGFSYSDANKA 548
           KH +  +L   FG K  +    SYS  NK+
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKS 30


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 31  KLVTLSALVIN**NLLLMXIFCEKXITKLTXSINNLTFN 147
           KLV L   + N  ++L +  + EK +  +   INN T N
Sbjct: 57  KLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATIN 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,680
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)