Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E05
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.1  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.5  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.5  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.3  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   5.7  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   5.7  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   10.0 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   10.0 

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +3

Query: 219 FSSTNSLPVASSI*RAKSEIVRPSTIFHFPLVTVTGNEYTTS 344
           +S+TNSLP+  +I    +E++ P+T ++    T+  + YT++
Sbjct: 130 YSNTNSLPITDTI-NGTTELIIPTTSYNNQSHTLIYSTYTST 170


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 344 TRSTIRSI*NNSHANPSVFSAKEPISHVV 430
           T S++ SI  NSH NP    A +P++  V
Sbjct: 663 THSSVNSI--NSHGNPRTVDANDPVADTV 689


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 524 RRICNNGSKTWCCRYCRQENV 462
           R++  NGS+ + C YC  ENV
Sbjct: 369 RQLSRNGSQRFKCPYCPNENV 389


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 613 QFPDASNAVAIVGGAQKSVSE 551
           QF D +N+   VGG  K VSE
Sbjct: 296 QFADTANSTVFVGGLSKFVSE 316


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 339 LYIHSLLLLPMESGKLLRVSLSLILPVKCSMLLAKSW 229
           L +HS   +   S KLLR S   IL V C    A+ W
Sbjct: 174 LIVHSSKFMSDHSQKLLRNSKHGILVVGCGQSAAEIW 210


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 129 CAYLM*VVXYTNYYP*RLLSQSLQTSKASCFSSTNSLPVASSI*RAKSEIVRPS 290
           C Y    +  T++ P  L S    TSK S  +S  + P++  +   KSE+V P+
Sbjct: 5   CLYRRSSLFDTSFVP--LHSSIPATSKMSASNSDVNAPISPVVDEGKSELVSPT 56


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 260 SNARCYWQRVGRRKTG 213
           SN  C W R+ R KTG
Sbjct: 403 SNRLCIWDRIERSKTG 418


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 25/88 (28%), Positives = 39/88 (44%)
 Frame = +3

Query: 159 TNYYP*RLLSQSLQTSKASCFSSTNSLPVASSI*RAKSEIVRPSTIFHFPLVTVTGNEYT 338
           T+Y P    S  + ++ +  +S T S   AS    + SEIV  +   +    ++ G    
Sbjct: 578 TSYIPSASSSYEVASNSSDYYSQTVSSITASGTTSSTSEIV-STPASNSNTGSLNGTSSF 636

Query: 339 TSRGVP*DPSETTPMLTHLSSVPRNQSL 422
               V    S+TTP  T  SS+  +QSL
Sbjct: 637 NVNSVGPSSSQTTP--TSSSSITGSQSL 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,270
Number of Sequences: 5004
Number of extensions: 54697
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)