Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E05
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788...   163   1e-40
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012...   162   3e-40
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352...    78   6e-15
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    28   5.9  
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816...    28   7.8  

>04_04_0724 +
           27578337-27578371,27578492-27578607,27578717-27578875,
           27578954-27579129,27580406-27580683,27580759-27580894,
           27580984-27581095,27581177-27581268
          Length = 367

 Score =  163 bits (396), Expect = 1e-40
 Identities = 80/158 (50%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
 Frame = -3

Query: 673 IGVPVKDXKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKR 494
           + V V D K  IIWGNHSSTQFPDAS+A       ++ V E+I D+ +L+  FVT VQ+R
Sbjct: 208 LNVHVGDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQR 267

Query: 493 GAAVIXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVT 317
           GAAVI                DHMRDW LGT +  WVSMGV SDGSYG P  V +SFPVT
Sbjct: 268 GAAVIKARKQSSSLSAASAACDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVT 327

Query: 316 VTNGKWKIVEGLTISDFARQMLDATGKELVEEKQEALD 203
              G+W +V+GL I DFAR  ++ +  EL EEK  A +
Sbjct: 328 CEKGEWSVVQGLEIDDFARSKMETSATELKEEKSIAYE 365


>10_08_0381 +
           17398972-17399014,17400823-17400981,17401066-17401241,
           17401565-17401842,17401938-17402073,17402183-17402294,
           17402421-17402515
          Length = 332

 Score =  162 bits (393), Expect = 3e-40
 Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
 Frame = -3

Query: 673 IGVPVKDXKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKR 494
           + V V D K  IIWGNHSSTQ+PD ++A       +K V E++ DD +L   F++TVQ+R
Sbjct: 172 LNVQVTDVKNAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQR 231

Query: 493 GAAVIXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVT 317
           GAA+I                DH+RDW LGT E  +VSMGV SDGSYG P  ++YSFPVT
Sbjct: 232 GAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVT 291

Query: 316 VTNGKWKIVEGLTISDFARQMLDATGKELVEEK 218
            + G+W IV+GL I +F+R+ +DAT +EL EEK
Sbjct: 292 CSGGEWTIVQGLPIDEFSRKKMDATAQELSEEK 324


>08_02_1600 +
           28133818-28133900,28134240-28134345,28135169-28135255,
           28135354-28135438,28135510-28135691,28135921-28135991,
           28136078-28136168,28136250-28136324,28136436-28136537,
           28136620-28136742,28136823-28136891,28136990-28137058,
           28137158-28137211,28137315-28137368
          Length = 416

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
 Frame = -3

Query: 670 GVPVKDXKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRG 491
           GV       + IWGNHS+TQ PD  NA   + G  + V E+I D  +L+  F  TVQKRG
Sbjct: 241 GVFYDKVSNMTIWGNHSTTQVPDFLNAK--ING--RPVKEVIKDTKWLEDEFTKTVQKRG 296

Query: 490 AAVIXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGS-YGTPRDVVYSFPV- 320
             +I                D +R     T E  W S GV + G+ YG   D+V+S P  
Sbjct: 297 GVLIQKWGRSSAASTAVSIVDAIRSLVNPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCR 356

Query: 319 TVTNGKWKIVEGLTISDFARQMLDATGKELVEEKQ 215
           +  +G +++V+ + + DF  + +  +  EL+ EK+
Sbjct: 357 SKGDGDYELVKDVAMDDFLWERIKKSEAELLAEKR 391


>03_03_0008 -
           13674602-13674708,13675272-13675439,13676169-13676787,
           13676868-13677330,13677855-13678036,13678093-13678235,
           13678315-13678423,13679000-13679456,13680490-13682473,
           13682507-13682626,13682920-13682971
          Length = 1467

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 306 PLVTVTGNEYTTSRGVP*DPSETTPMLTHLSSVPRNQS 419
           P VT  G+E       P DP+E   +L  + ++P + S
Sbjct: 107 PSVTAVGSERCVVNSAPDDPTENVSILDEMRNIPLSTS 144


>03_02_0404 -
           8165211-8165318,8165397-8165733,8166031-8166242,
           8166419-8166526,8166676-8166783,8166884-8166993,
           8167122-8167228,8167349-8167566,8167674-8167841,
           8168033-8168151,8168438-8168525,8168655-8168849,
           8168968-8169271,8169363-8169480,8170034-8170133,
           8170283-8170468
          Length = 861

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 360 DPSETTPMLTHLSSVPRNQSLMWSDAALAAERADD 464
           +PSE +P     ++ P NQ L+W      A   DD
Sbjct: 619 NPSEASPEWVSDNAYPTNQPLIWYKTKFTAPAGDD 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,613
Number of Sequences: 37544
Number of extensions: 343874
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)