Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_E05
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-4|AAO12428.1| 181|Caenorhabditis elegans Hypothetical ... 158 4e-39
AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical ... 158 4e-39
AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical ... 81 7e-16
U70850-1|AAB09124.2| 104|Caenorhabditis elegans Hypothetical pr... 31 0.99
AC006648-8|AAF39857.1| 302|Caenorhabditis elegans Btb and math ... 29 3.0
AF106573-10|AAC78155.2| 862|Caenorhabditis elegans Gex interact... 28 7.0
U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone... 27 9.2
U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical p... 27 9.2
U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical p... 27 9.2
AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical ... 27 9.2
>AF125955-4|AAO12428.1| 181|Caenorhabditis elegans Hypothetical
protein F46E10.10c protein.
Length = 181
Score = 158 bits (383), Expect = 4e-39
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Frame = -3
Query: 670 GVPVKDXKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRG 491
G + + K VIIWGNHS TQFPD ++A G + + D+A+L+G F+ TVQKRG
Sbjct: 18 GTTIGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRG 77
Query: 490 AAVIXXXXXXXXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTV 314
+I DH+ DW GT+ ++VSM V SDGSYG P+ +++SFPVT+
Sbjct: 78 GVIIEKRKLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTI 137
Query: 313 TNGKWKIVEGLTISDFARQMLDATGKELVEEKQEALDVCKD 191
G+WKIV+GL+ DFA+ + AT KEL EE+ +AL C D
Sbjct: 138 EGGEWKIVQGLSFDDFAKGKIAATTKELEEERDDALKACDD 178
>AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical
protein F46E10.10a protein.
Length = 336
Score = 158 bits (383), Expect = 4e-39
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Frame = -3
Query: 670 GVPVKDXKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRG 491
G + + K VIIWGNHS TQFPD ++A G + + D+A+L+G F+ TVQKRG
Sbjct: 173 GTTIGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRG 232
Query: 490 AAVIXXXXXXXXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTV 314
+I DH+ DW GT+ ++VSM V SDGSYG P+ +++SFPVT+
Sbjct: 233 GVIIEKRKLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTI 292
Query: 313 TNGKWKIVEGLTISDFARQMLDATGKELVEEKQEALDVCKD 191
G+WKIV+GL+ DFA+ + AT KEL EE+ +AL C D
Sbjct: 293 EGGEWKIVQGLSFDDFAKGKIAATTKELEEERDDALKACDD 333
>AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical
protein F46E10.10b protein.
Length = 273
Score = 81.0 bits (191), Expect = 7e-16
Identities = 35/91 (38%), Positives = 48/91 (52%)
Frame = -3
Query: 670 GVPVKDXKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRG 491
G + + K VIIWGNHS TQFPD ++A G + + D+A+L+G F+ TVQKRG
Sbjct: 173 GTTIGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRG 232
Query: 490 AAVIXXXXXXXXXXXXXXXSDHMRDWFLGTE 398
+I DH+ DW GT+
Sbjct: 233 GVIIEKRKLSSAMSAAKAACDHIHDWHFGTK 263
>U70850-1|AAB09124.2| 104|Caenorhabditis elegans Hypothetical
protein F28F9.3 protein.
Length = 104
Score = 30.7 bits (66), Expect = 0.99
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -1
Query: 411 SLALKTDGLAWELFQMDLMVLRVMLYIHSLLLLPMESGKLLRVSLSLILPVKCSMLLA 238
S+ K G+ W+ +++ + + +L +HSLL+LP+ G L ++S++L + + S LA
Sbjct: 11 SITRKYFGIRWD-YRISSINMASLLDLHSLLVLPL--GDLPKISIALPISLALSNSLA 65
>AC006648-8|AAF39857.1| 302|Caenorhabditis elegans Btb and math
domain containingprotein 1 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 494 WCCRYCRQENVICSFCC*SCIRPHERLVPW 405
W +CR+E + F C+RP + +VPW
Sbjct: 36 WQLSFCRKEEFVGVFL--RCLRPTDGIVPW 63
>AF106573-10|AAC78155.2| 862|Caenorhabditis elegans Gex interacting
protein protein 12 protein.
Length = 862
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 464 HFPGGNNGSTTFLNRCYKCAFQICIIIDNFRNRFLSASNNSYSI 595
H P ++G + LNR + C I ++F + F+ A+N + +
Sbjct: 398 HLPSSSHGECSNLNRTLPASDLNCSIGEDFDSSFVDANNQTLPV 441
>U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 45 protein.
Length = 525
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 602 CFECCSYCWRRSKICF*NYQ**CIFERRICNNGSKTWCCRYCRQENVI 459
C C+ +RR+ Y+ C F+R+ + +K + CR CR E +
Sbjct: 19 CCRACAAFFRRTLTMNLRYK--CRFDRKCEVSFNKRYSCRCCRYEKCV 64
>U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical
protein F42G9.1b protein.
Length = 469
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 352 TPRDVVYSFPVTVTNGKWKIVEGLTISDFARQMLDATGKELVEEKQEALDVC 197
TP D F V +G W +E + DF R +L A G E D C
Sbjct: 395 TPED---EFIVVACDGIWNSMESQQVVDFVRDLL-AKGSSCAEVCDALCDAC 442
>U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical
protein F42G9.1a protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 352 TPRDVVYSFPVTVTNGKWKIVEGLTISDFARQMLDATGKELVEEKQEALDVC 197
TP D F V +G W +E + DF R +L A G E D C
Sbjct: 417 TPED---EFIVVACDGIWNSMESQQVVDFVRDLL-AKGSSCAEVCDALCDAC 464
>AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical
protein Y119C1A.1 protein.
Length = 256
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 509 NGSKTWCCRYCRQENVICSFCC*SCIRPHERLVP 408
N + W C C +EN S+ C C P R P
Sbjct: 205 NSTGPWICDRCSRENNSNSYRCHHCQLPSRRFDP 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,056
Number of Sequences: 27780
Number of extensions: 314403
Number of successful extensions: 858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -