Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E04
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    58   2e-09
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    31   0.14 
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    29   0.97 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   5.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   5.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.1  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
 Frame = -1

Query: 499 GWWKYEFCYGKHVLQYHI------DRAGEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQ 338
           G+W Y++ YG+HV QYH+      D+       +LG          +++N   A   ++ 
Sbjct: 132 GYWTYDYVYGQHVRQYHLEPQQGSDKVLANPMYILGTAPNTQTKKNLEEN--WAIGFVEG 189

Query: 337 RISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLI 158
           +  +   + NG +CD T RPR   +  +C  NS +P +++ Y  E  +C Y + +  P +
Sbjct: 190 KAYLQTTFRNGTMCDITKRPRHVILSYECSTNSDTP-EITQY-QEVSSCAYSMTIHVPGL 247

Query: 157 CDILPLADENGLIKTVREALEKKKERSEAVDDXSRQ 50
           C +     +  +           KE+S  VD    Q
Sbjct: 248 CSLPAFKIQEDIPSEKIVCYNVIKEKSNEVDHKDSQ 283


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 457 QYHIDRAGEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRISISHFY 314
           QYH D   +K  + +G + +     WI     KA K ++++ S +H Y
Sbjct: 23  QYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEY 70


>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 241 SSSPAQVSLYLLEPKTCHYILGVESPLICDILPLADENGLIKTVREA--LEKKKERSEAV 68
           +SSP    L +++ K     L ++   +  I+P  D N L+KT R+        E+ + V
Sbjct: 17  TSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQLGNYSLPDEKPDLV 76

Query: 67  DD 62
           DD
Sbjct: 77  DD 78


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 605 PPKSVPSVDKRPPPITDDSPV 543
           PP+S PS  ++PPP++    V
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAV 385


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -1

Query: 316 YSNGDVCDKTGRPRQTEVKLKC-LENSSSPAQVSLYLLEPKTCHYILGVESPLICDILPL 140
           Y NG  C   G  R   V ++C +EN        + +LE + C Y++ ++SP  C   P 
Sbjct: 425 YENGQSC-WNGPHRSAIVTVECGVENEI------VSVLEAQKCEYLIKMKSPAACS--PD 475

Query: 139 ADENGLIKTVREALE 95
             +  L+ T   A E
Sbjct: 476 QLKQSLLNTQNSANE 490


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 599 KSVPSVDKRPPPITDDSPV 543
           K++PS+ K+P P+ D +P+
Sbjct: 496 KTLPSIGKKPIPLLDPNPI 514


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 238 SSPAQVSLYLLEPKTCHYILGVESP 164
           SSP   SL+   PK  H  LG ESP
Sbjct: 105 SSPLSSSLHRSSPKRPHDSLGEESP 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,405
Number of Sequences: 5004
Number of extensions: 65159
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)