Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_E04
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0916 - 25932934-25933090,25933170-25933276,25933356-259334... 85 6e-17
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 33 0.25
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 32 0.44
11_06_0610 - 25449085-25453284 29 4.1
07_03_0387 - 17536026-17536636,17536772-17537150 29 4.1
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 29 4.1
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606... 29 4.1
01_06_0146 + 26969011-26969995,26970878-26970930 29 4.1
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 29 5.4
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 29 5.4
06_01_0020 + 212055-213440 28 7.2
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 28 7.2
>06_03_0916 -
25932934-25933090,25933170-25933276,25933356-25933422,
25933509-25933624,25933873-25933944,25934055-25934255,
25934652-25934728,25935131-25935230
Length = 298
Score = 85.0 bits (201), Expect = 6e-17
Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Frame = -1
Query: 586 ASTSALRQSRMILPYEPS----LXGENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKT-- 425
A+ + R + P +P + + C GWW YEFCY + Q H++ GEK
Sbjct: 96 ATNVIIESERRVKPKDPDELLEILKDQCFYRHEGWWSYEFCYYGKIRQVHVE--GEKVIQ 153
Query: 424 TVMLGRFDEKAHLDWIKDNKGKAPKPIDQRISIS-----HFYSNGDVCDKTGRPRQTEVK 260
+LG +D A + ++ + D I S H Y+NG VCD T PR+TEV+
Sbjct: 154 EYVLGEYDADATDAYYENQTSDSADEDDNLIDTSKRYHVHLYTNGTVCDLTDMPRETEVR 213
Query: 259 LKCLENSSSPAQVSLYLLEPKTCHYILGVESPLICDILPLADENGLIKTVREALEKKKER 80
C S P V + E +C Y+L V+SP++C PL + ++ E E
Sbjct: 214 FVC----SEPTVVISSIKEISSCKYVLTVQSPMLCK-NPLFQQEKRTLSI-HCNELLAEA 267
Query: 79 SEAVDDXS 56
VDD S
Sbjct: 268 EATVDDDS 275
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 316 YSNGDVCDKTGRPRQTEVKLKC-LENSSSPAQVSLYLLEPKTCHYILGVESPLICD 152
+SNGD C G R +V+L+C L N + EP C Y+ + +P +CD
Sbjct: 543 FSNGDRC-WNGPDRSLKVRLRCGLNNELNGVD------EPSRCEYVAVLSTPALCD 591
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 269 GLPGSAGFVANVAVRIEMRY*NSLIYRFRSLPFIILDPVQMRFLIKSTQHYGGLLAGAIY 448
G PG AN+ I + NS +Y FR+ +++ + M ++ + +G IY
Sbjct: 510 GAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIY 569
Query: 449 V 451
+
Sbjct: 570 M 570
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 623 EDMTSDPPKSVPSVDKRPPP 564
E+ T PPKS P +K PPP
Sbjct: 764 EEYTPSPPKSSPPEEKSPPP 783
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 638 PXGDDEDMTSDPPKSVPSVDKRPP 567
P E+ T PPKS P +K PP
Sbjct: 596 PPPTPEEYTPSPPKSTPPAEKSPP 619
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 647 ELHPXGDDEDMTSDPPKSVPSVDKRPPPITDDSPVRAFLXRGK 519
E+ P ++E+ DP + V + K+ PP+T PV F RG+
Sbjct: 247 EVEPMVEEEE---DPEERVMELVKQIPPLTQPPPVEHFGGRGR 286
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 638 GAVRISNGFRRPSQIFRLSKLQVYP 712
G RI NG RRP RL ++++YP
Sbjct: 849 GPFRIINGVRRPIPFIRLLEVELYP 873
>02_02_0009 +
6068260-6068591,6068797-6068917,6069034-6069122,
6069207-6069291,6069421-6069580,6069667-6069743,
6069848-6069898,6069979-6070069,6070167-6070468,
6070549-6070830,6070911-6071388,6071457-6071560,
6071647-6071809,6071895-6072017,6072099-6072217,
6072304-6072636,6072713-6073003,6073088-6073171,
6073260-6073393,6073478-6073705,6073795-6073966,
6074062-6074316,6074408-6074668
Length = 1444
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 332 NSLIYRFRSLPFIILDPVQMRFLIKSTQHYGGLLAGAIYV 451
NS +Y F+ L IIL + M +++ H + GAI++
Sbjct: 520 NSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDGAIFL 559
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 638 PXGDDEDMTSDPPKSVPSVDKRPPPITDDSP 546
P D +D S PP P PPPI+ +P
Sbjct: 12 PATDGDDAQSHPPPPTPHPATDPPPISPQNP 42
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 304 DVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEP 200
D C+KTG R+T V+ + PA S Y EP
Sbjct: 40 DECEKTGSLRETSVRHCQVPTDDHPADKSWYAHEP 74
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = +2
Query: 332 NSLIYRFRSLPFIILDPVQMRFLIKSTQHYGGLLAGAIYV 451
N +YRFR+ +++ + M +++ H+ G +Y+
Sbjct: 569 NMFVYRFRAFQLLVITIIVMTLFLRTNMHHETRTDGIVYL 608
>06_01_0020 + 212055-213440
Length = 461
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 503 TTI*TIFPX*GRLVRENHP*LAEGACRRSV 592
TT+ T +P GR V NHP EG C S+
Sbjct: 67 TTLNTYYPVAGRFVTHNHP-EPEGGCSVSI 95
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 632 GDDEDMTSDPPKSVPSVDKR 573
GDD+D T+ PP SV VD R
Sbjct: 400 GDDDDWTTAPPSSVLFVDPR 419
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,768,213
Number of Sequences: 37544
Number of extensions: 468761
Number of successful extensions: 1473
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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