Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_E04
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical ... 147 9e-36
U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical pr... 49 4e-06
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 31 0.69
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 31 0.69
U39855-3|AAA81082.1| 467|Caenorhabditis elegans Patterned expre... 31 0.91
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z47358-10|CAA87438.1| 507|Caenorhabditis elegans Hypothetical p... 29 2.8
Z47356-9|CAA87420.1| 507|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical ... 28 6.4
>AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical
protein Y105E8A.2 protein.
Length = 534
Score = 147 bits (356), Expect = 9e-36
Identities = 66/156 (42%), Positives = 98/156 (62%), Gaps = 2/156 (1%)
Frame = -1
Query: 532 LXGENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVMLGRFDEKAHLDWIK-DNKGK- 359
L GE+C+ GGTGWWKYEFCYGKHV+Q+H D G+++ ++LG FDE H +W+K D +
Sbjct: 347 LTGEDCIVGGTGWWKYEFCYGKHVIQFHEDANGQRSDILLGVFDEVVHKEWVKLDRHARG 406
Query: 358 APKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYIL 179
A + +Q IS Y+ GD+CD+TG EV+++C S S++L EP+TC Y+L
Sbjct: 407 AIQGNNQIDQISQIYAKGDICDETG-AHNVEVRIRCATADHSALSFSMHLTEPRTCQYVL 465
Query: 178 GVESPLICDILPLADENGLIKTVREALEKKKERSEA 71
++S C+ L AD+ GLI+ + A + + A
Sbjct: 466 TIDSERFCEPLQFADDYGLIELTQVASSSQSAAAAA 501
Score = 58.0 bits (134), Expect = 7e-09
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 11/125 (8%)
Frame = -1
Query: 496 WWKYEFCYGKHVLQYHIDR--AGE--KTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRIS 329
+W Y+ C+G++V+QYH D+ G+ +T LG FD + + + KP +RI
Sbjct: 116 YWTYQVCHGRYVIQYHEDKMLTGQVSRTEFYLGNFDSA-----LTASTNEQVKPATRRIE 170
Query: 328 ISHF------YSNGDVCDKT-GRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVE 170
+ Y++G CD T G+PR T+V C+E L + E +CHY + +
Sbjct: 171 NEDYPYYSVSYNHGTSCDVTGGKPRTTDVVYICVEKVQHKI---LSVTEISSCHYEIVIM 227
Query: 169 SPLIC 155
+ L+C
Sbjct: 228 TDLLC 232
>U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical
protein F48E8.4 protein.
Length = 816
Score = 48.8 bits (111), Expect = 4e-06
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Frame = -1
Query: 505 GTGWWKYEFCYGKHVLQYHIDRAGEKTTV--MLGRFDEKAHLDWIKDNKGKAPKPIDQRI 332
G WW Y C G+ + Q H G++ V +LG FD + +++ D+ +
Sbjct: 129 GNHWWSYILCRGQTIEQVH-GEPGQEGYVKNILGLFDGSLKMPSYQESTD------DRLL 181
Query: 331 SISHFYSNGDVCD--KTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLI 158
+ Y++G CD + PR T V+ +C S+ ++E K C Y++ V+ +
Sbjct: 182 FVEETYTSGTFCDLEEYREPRMTSVRYECDAQLSTNEVYISSVVEVKPCQYLMIVKVGTL 241
Query: 157 C---DILPLADENG--------LIK-TVREALEKKKERSEAVDDXSRQECTKIRE 29
C + LP + N L K VR+ LE++ E + ++ R K R+
Sbjct: 242 CRYPEFLPASQSNTKKIGCQPFLRKEDVRQLLERQLEEKQKAEESQRVLTVKKRK 296
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -1
Query: 382 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLE 203
W D KG P +I S++ N + ++ EVK C N+ + Q++LY L
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLY-LR 235
Query: 202 PKTCHYILGVESP 164
K Y++ + P
Sbjct: 236 RKPLFYLVNLIIP 248
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -1
Query: 382 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLE 203
W D KG P +I S++ N + ++ EVK C N+ + Q++LY L
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLY-LR 235
Query: 202 PKTCHYILGVESP 164
K Y++ + P
Sbjct: 236 RKPLFYLVNLIIP 248
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -1
Query: 382 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLE 203
W D KG P +I S++ N + ++ EVK C N+ + Q++LY L
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLY-LR 235
Query: 202 PKTCHYILGVESP 164
K Y++ + P
Sbjct: 236 RKPLFYLVNLIIP 248
>U39855-3|AAA81082.1| 467|Caenorhabditis elegans Patterned
expression site protein 8 protein.
Length = 467
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 605 PPKSVPSVDKRPPPITDDSPVRAFLXRGKLSKWWYRLVEIRVLL 474
PP S P V +PPP+ + V + G WW L+ I +LL
Sbjct: 173 PPHSPPHV--QPPPVVNPGAVGTYTGYGGAWPWWVWLLIILLLL 214
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3
Query: 680 FEKDGETHLKFELHPXGDDEDMTSDPPKSV---PSVDKRPPPITDDSPVR 540
F DG+ LK P + + + PP SV PS ++P PI + SP+R
Sbjct: 851 FTDDGQAVLKNA--PRQTETQLKAPPPPSVARQPSPVRQPSPIREPSPIR 898
>Z47358-10|CAA87438.1| 507|Caenorhabditis elegans Hypothetical
protein ZK1307.8 protein.
Length = 507
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = -1
Query: 478 CYGKHVLQYHIDRA--GEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRISISHFYSNG 305
C+ ++V QY G+ T G + + L K+ G P + S HF +G
Sbjct: 398 CFDRNVQQYTYQFCPFGQNTQKDTGAYSGTS-LGSFKEWSG----PEGNKYSKMHF-GDG 451
Query: 304 DVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLIC 155
C G R T++ ++C E + + + EP C Y+ +PL C
Sbjct: 452 QQC-WNGPKRSTDITIECGEENEL-----VEVTEPAKCEYLFTFRTPLAC 495
>Z47356-9|CAA87420.1| 507|Caenorhabditis elegans Hypothetical
protein ZK1307.8 protein.
Length = 507
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = -1
Query: 478 CYGKHVLQYHIDRA--GEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRISISHFYSNG 305
C+ ++V QY G+ T G + + L K+ G P + S HF +G
Sbjct: 398 CFDRNVQQYTYQFCPFGQNTQKDTGAYSGTS-LGSFKEWSG----PEGNKYSKMHF-GDG 451
Query: 304 DVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLIC 155
C G R T++ ++C E + + + EP C Y+ +PL C
Sbjct: 452 QQC-WNGPKRSTDITIECGEENEL-----VEVTEPAKCEYLFTFRTPLAC 495
>AC024751-8|AAK21510.3| 369|Caenorhabditis elegans Hypothetical
protein Y18H1A.7 protein.
Length = 369
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 521 KLSKWWYRLVEIRVLLRKARAPVPHRSRRREDHRNVGS 408
K++ + +LVEI + KA P P R R R+ R GS
Sbjct: 250 KIALDFKKLVEISKIALKAEIPEPERKRLRKSPRLAGS 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,333,590
Number of Sequences: 27780
Number of extensions: 380595
Number of successful extensions: 1228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -