Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E03
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   2.7  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   3.6  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   3.6  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   4.7  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   4.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   6.2  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   6.2  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.2  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 341 DEVTVLHSRMKFSKLERD-LLYFLVEHRDDKVSDRPMKPYESLILNTSMKQ 192
           D+      R+K  KL  D L   L E+  +K  D   KPYESL  N  ++Q
Sbjct: 752 DQKAAGRDRLKLIKLHYDHLSQALHEYEREKCFD-VRKPYESLFQNQDVQQ 801


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 115 GKSLVSLSLEKPLKNVEXQLGKCM 44
           G+S +S S +K +K  + +LGKC+
Sbjct: 322 GRSFLSTSFDKTIKLWDTELGKCL 345


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 19  PGRFLIXRPYIFPTGXPHSLRVFPETGKR 105
           PGR L  +P   PT  P SL V  E+ K+
Sbjct: 597 PGRTLSPKPTRIPTPIPSSLNVSLESSKK 625


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 225 IGFHGSIRNFVISMFYQKVKQISFQFREFHSAM 323
           IGF  +  +FV S     VK IS   RE+H A+
Sbjct: 362 IGFSSAYISFVASTLQACVKVISTTHREYHLAV 394


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +1

Query: 304 ENFILLCKTVTSSKSLTRAAR*LSGLKLR*WALFNNISSSCTLGDNGKPMYSPTPTLSI 480
           E F   CK+V S+K +TR    LS      W L +++ S+  L    K  Y  + TL I
Sbjct: 285 EVFEEYCKSVVSTKKITRRKNTLSDF----WTLLHSLPST-LLWPQFKRKYRKSSTLQI 338


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 128  RLDNWEIPRFPVSGKTLKEC 69
            R+  W+IP   +  KT K+C
Sbjct: 1905 RMQKWDIPPLSLDNKTTKDC 1924


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 701  VGDPDVRVKEDYLRIMRYFRFYGXIALKPDNHEEETLRVLXNNVH 567
            V D + R K+D L   RY +      ++ +   E+ LR+  +N H
Sbjct: 1729 VQDLEEREKKDQLLFQRYQKELNGFKVQLEEEREKNLRIRQDNRH 1773


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 602 EETLRVLXNNVHGLGNISGERIWG 531
           +ETLRV   N+HG+G I G  + G
Sbjct: 380 DETLRVF--NLHGIGGIVGSIVLG 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,566
Number of Sequences: 5004
Number of extensions: 55191
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)