Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E03
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0105 - 5345149-5347833                                           29   2.8  
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624           29   3.7  
02_02_0537 + 11308195-11309667                                         29   4.9  

>10_02_0105 - 5345149-5347833
          Length = 894

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 650 YFRFYGXIALKPDNHEEETLRVLXNNVHGLGNIS 549
           YF  YG +++ P     E LR L   + G G IS
Sbjct: 216 YFHKYGWVSISPKYSALEVLRDLVRQIRGTGKIS 249


>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
          Length = 528

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 575 NVH-GLGNISGERIWGELKKILQG-NFAGNLLKTMLNVGVGEYMGFPLSPNVQELDM 411
           N H  +GNISG  +   L K   G +FA   L  M+ VG+  ++  P+SP V E+D+
Sbjct: 219 NAHTSVGNISGSLLAAFLLKFGWGWSFAIPSL-IMVAVGLLVFVFLPVSPEVMEIDI 274


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 611 NHEEETLRVLXNNVHGLGNISGERIWGELKKILQGNFAGNLLKTMLNVGVGEY 453
           NHEE +L+ + +  HGL N     I+  L +ILQ +F  ++      +G G Y
Sbjct: 319 NHEEISLQTIID--HGLVN----SIYATLDQILQSDFGSDVKDVCRRLGNGRY 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,886,387
Number of Sequences: 37544
Number of extensions: 317426
Number of successful extensions: 781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)