Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E03
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-4|CAB02125.2|  436|Caenorhabditis elegans Hypothetical pr...   128   4e-30
Z47812-9|CAA87794.2|  377|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U88309-3|AAB42335.2|  333|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z79757-4|CAB02125.2|  436|Caenorhabditis elegans Hypothetical
           protein F55B12.4 protein.
          Length = 436

 Score =  128 bits (309), Expect = 4e-30
 Identities = 78/235 (33%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
 Frame = -1

Query: 713 RVAFVGDPDVRVKEDYLRIMRYFRFYGXIALKPDNHEEETLRVLXNNVHGLGNISGERIW 534
           R+AFVGD   R++EDYLRI+RYFRF+G I+     HE +T++ +  N  G+  IS ERIW
Sbjct: 160 RIAFVGDARQRIQEDYLRILRYFRFFGRIS-DCTEHEHDTIQAIVENKDGMAGISAERIW 218

Query: 533 GELKKILQGNFAGNLLKTML-NVGVGEYMGFPLSPNVQELDMLLKRAHHLNLSPLSYLAA 357
            ELKKI+ G  A  +LK M+    + +Y+G P   N++    +  R     + P++ +A 
Sbjct: 219 TELKKIVVGRMADEVLKAMIEQCELQKYLGLPKECNLERFHTVFNR-FSKTVEPMTMIAC 277

Query: 356 LVKDLDEVTVLHSRMKFSKLERDLLYFLVEHRD-------------DKVSDRPMKP-YES 219
           L +D  ++   H   K S  ER L  F++  R              D++ D  ++P +E+
Sbjct: 278 LCEDEHQIAEFHRITKLSNDERLLGEFILSERQSAVENLKNDDWWIDRIVDLEVRPGHEN 337

Query: 218 LILNTSMKQKVAIEYVREVLKYRGDEELLKRLDNWEIPRFPVSGKTLKECGXPVG 54
                 ++Q++ ++  + VL    DEE ++ ++N+E P+FP++G+ L E G   G
Sbjct: 338 --QQDRLRQRL-VQLAKSVL---ADEERIQMIENFEAPKFPITGRDLMEAGVRKG 386


>Z47812-9|CAA87794.2|  377|Caenorhabditis elegans Hypothetical
           protein T05H10.8 protein.
          Length = 377

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 167 EVLKYRGDEELLKRLDNWE-IPRFPVSGKTLKE 72
           +VLK +  EELL+RL  WE  P    SGK L+E
Sbjct: 86  DVLKVKSLEELLQRLTEWEDDPAMKASGKALRE 118


>Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical
           protein ZK265.4 protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 448 PMYSPTPTLSIVFNKFPAKFPCKIFLSSPHI 540
           P Y P  + S  FN++P  FP  I    P +
Sbjct: 239 PYYIPNQSFSNAFNQYPMPFPYPIHFEPPQL 269


>U88309-3|AAB42335.2|  333|Caenorhabditis elegans Hypothetical
           protein T23B3.6 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 182 WLLFASLTYLILMIHRVSWVYQKLCHLYVLPESKAN 289
           W++  +LT++ ++   +S +YQKLC +Y   ++  N
Sbjct: 137 WIVRGTLTFVAILSLVLSILYQKLCGVYTHYDAATN 172


>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 461 LHLH*A*SSTNFQQSFLAKFF*VHPIFFHLIYFPS 565
           L  H + SS++   +F+  FF   P+FF + +F S
Sbjct: 5   LFFHFSTSSSSIFSAFIPSFFFTFPLFFFIFHFSS 39


>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical
           protein C52A11.4d protein.
          Length = 2491

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 461 LHLH*A*SSTNFQQSFLAKFF*VHPIFFHLIYFPS 565
           L  H + SS++   +F+  FF   P+FF + +F S
Sbjct: 5   LFFHFSTSSSSIFSAFIPSFFFTFPLFFFIFHFSS 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,068,833
Number of Sequences: 27780
Number of extensions: 297714
Number of successful extensions: 890
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)