Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E02
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   1.6  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   1.6  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    26   5.0  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   6.6  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    25   6.6  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.7  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 199 CT*YLLDYLNSPI*IYVWNQKIYTISRYYYLFP 101
           C   LLD LNS   IY+ ++++  +++ + LFP
Sbjct: 526 CIVLLLDLLNSQKIIYLDDERVVLLNKIFSLFP 558


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 148 WNQKIYTISRYYYLFPAXCVCLG*FRQSDL 59
           WN K +T+S+ + L  A  +CLG     D+
Sbjct: 231 WNGKFFTLSQSFKLHLADALCLGVSANGDM 260


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 7   YNTTHPFKHMSINLSCISNH--FAEIIPNKRXVLETNNNI 120
           +NT + + H+      ++NH    EIIPNK+ +     NI
Sbjct: 322 FNTNNLWFHLPSVKRVVNNHELSMEIIPNKKTIKHKGENI 361


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 435 SQRQILEKSRLKILPLEKKNTLPGSATRILICESS 331
           SQ  +L K++ K+LPL +K T         +C  S
Sbjct: 312 SQSIVLLKNKKKLLPLSRKGTFAVIGPNAKVCNYS 346


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 441 NDMKTYKHYM*NIGQSCHMFKLQSVNYLMFFFFT*DGMFQMPLP 572
           +D K +K  +   G+  H FK +  +++  F F  +    +PLP
Sbjct: 58  SDTKLWKRLLKITGKQAHQFKDKPFSHIFAFLFLHELSAILPLP 101


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 70  AEIIPNKRXVLETNNNIWI*YKSFDSIHRFILVNSNSQVDIKYKKPFY 213
           A ++ N++  +   N   +     D+ +  ILV S SQ+D  Y   FY
Sbjct: 292 AHLVKNRKVYMYYENGSQLLALDKDASNDAILVTSMSQIDNIYDNGFY 339


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +3

Query: 315  LIIISLNFRKSI--FWSLTLVMYFFFLKVKSLIGISLVFAFD*FNDMKTYKHYM*NIGQS 488
            +I+  LN  K I   W+    +++    ++ L+   L  +F  FN  KTY H +  + + 
Sbjct: 1527 IIVKFLNIWKEIQQIWTHLSAIFYESTYIQQLLP-ELAASF--FNSSKTYMHLVTLLKER 1583

Query: 489  CHMFKLQSVNYLM 527
             +++K+ ++  L+
Sbjct: 1584 SYLYKVSNIPSLL 1596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,159
Number of Sequences: 5004
Number of extensions: 50552
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)