Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E01
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   1.1  
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   1.5  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   2.6  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   2.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   4.5  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    24   6.0  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    24   7.9  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    24   7.9  

>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 71  VLLVPVSLPWFRXWSS-CSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGS 247
           V L P+ +   R +     +I Q+YA+   + R  L   L  H   EGS     S++ GS
Sbjct: 62  VTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRYLEKHGKLEGS--MKESSINGS 119

Query: 248 VL 253
           +L
Sbjct: 120 LL 121


>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = -2

Query: 112 PXPEPWEAYRN------KQYKFYSPIRDYSKEESP 26
           P  EPW  ++N      + +  YS ++D S  ESP
Sbjct: 91  PDQEPWNVFQNAKKRDGQYFAVYSKLKDDSSNESP 125


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 NELNLQSISISTAIFSLWTVF 289
           NE NL ++ I T +FS  TVF
Sbjct: 311 NESNLSNLKIETVLFSNCTVF 331


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 157 CVWLCV--ILMYLGTRRPXPEPWE 92
           C W  V  +L Y+   +P PEP+E
Sbjct: 440 CAWSLVDPLLKYMEEEKPVPEPYE 463


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 185 LSPHIHTEGSKPYASSNLRGS 247
           L+P IH EG + Y+SS  + S
Sbjct: 829 LAPSIHVEGLETYSSSERKDS 849


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 59  RIELVLLVPVSLPWF 103
           RI  VLL+ + LPWF
Sbjct: 2   RINFVLLITLILPWF 16


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -2

Query: 151 WLCVILMYLGTRRPXPEPWEAY 86
           W C+   Y     P PE W  Y
Sbjct: 367 WSCLDKFYTAFEMPFPENWSFY 388


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -2

Query: 139 ILMYLGTRRPXPEPWEAYRNKQYKFYS---PIRDYSKEESPA 23
           IL Y+      P+  E +RN   KFY     +R     +SP+
Sbjct: 95  ILQYIRMELIPPDCLEVFRNSDVKFYDGCLTVRIIDHRQSPS 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,024
Number of Sequences: 5004
Number of extensions: 28769
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)