Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D24
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q73MR2 Cluster: Membrane protein, putative; n=1; Trepon...    34   2.8  
UniRef50_A5VGI2 Cluster: MscS Mechanosensitive ion channel; n=1;...    33   8.4  
UniRef50_A0BEE5 Cluster: Chromosome undetermined scaffold_102, w...    33   8.4  

>UniRef50_Q73MR2 Cluster: Membrane protein, putative; n=1; Treponema
           denticola|Rep: Membrane protein, putative - Treponema
           denticola
          Length = 209

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 109 LFGYLLHFMRTTEHQSDFLMNSMNLITFQIVLQIFQYKIQCNLNTQNPYCYSLFLGTVP- 285
           LFG    F+ +     + L NS++ + F I   +F Y    N+NT +    SLFL  +  
Sbjct: 75  LFGLAFFFLISWSLSEETLSNSLSAL-FGIFSAVFAYLFYRNINTPDSTELSLFLLIITG 133

Query: 286 SVLIYKYLHY 315
           ++LI+ +++Y
Sbjct: 134 TILIFDFVYY 143


>UniRef50_A5VGI2 Cluster: MscS Mechanosensitive ion channel; n=1;
           Sphingomonas wittichii RW1|Rep: MscS Mechanosensitive
           ion channel - Sphingomonas wittichii RW1
          Length = 371

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 100 RVILFGYLLHFMRTTEHQSDFLMNSMNLITFQIVLQIF 213
           R ++FG + H MR  EH S  LM+++ +I   + + +F
Sbjct: 114 REVVFGAIEHRMRDQEHNSRALMSALGIIRLLVTISLF 151


>UniRef50_A0BEE5 Cluster: Chromosome undetermined scaffold_102,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_102,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 142

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 26/89 (29%), Positives = 43/89 (48%)
 Frame = +3

Query: 111 IWLFITFYENYRTSIRFFNEFDESDNISNRITNLPV*NTV*SKYAKPILLLVIFRNSSLS 290
           IW    F  NY T I +FN       + N + N P    +   Y   IL++  F N  L 
Sbjct: 60  IWDVADFKYNYSTHIEYFN-----CKVINYLKNFPYFFIINITYLSLILVISPFVNLQLI 114

Query: 291 PDLQIFTLLEIMKCQSVAY*ILLMQIDNF 377
            +++I+  L I+  Q+V Y +L+  +++F
Sbjct: 115 -EVRIWFRLLILMMQNVLYQVLVSIMNDF 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,677,258
Number of Sequences: 1657284
Number of extensions: 9459396
Number of successful extensions: 18624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18623
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)