Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D21
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   3.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.5  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   8.6  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 543 LTKYFNFETINEKQKFIFTVHILNYH 620
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 543 LTKYFNFETINEKQKFIFTVHILNYH 620
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 543 LTKYFNFETINEKQKFIFTVHILNYH 620
           L  YFN          + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 189 YSLLKKIILDICMSKVINLKIYLINQEI 272
           YS+L K     C  K+ N  + LIN  +
Sbjct: 306 YSILIKKADSFCKKKLENYSLQLINHRV 333



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 392 SYIIFKCTNDH*KLNHFLKQTFLT*ILW 475
           S ++F C   +    H L  T LT ++W
Sbjct: 219 SQLVFMCKKINKLYGHQLLLTILTYLIW 246


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 552 YFNFETINEKQKFIFTVHILNYH 620
           YFN          + TV +LNYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 552 YFNFETINEKQKFIFTVHILNYH 620
           YFN          + TV +LNYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 552 YFNFETINEKQKFIFTVHILNYHREQL 632
           Y  F+T+  +++F+F  ++    R +L
Sbjct: 250 YSKFQTLELEKEFLFNAYVSKQKRWEL 276


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -2

Query: 204 SLITNIMFTLNLNFIFLLSNM 142
           SLI +++  + +NF+ LL ++
Sbjct: 212 SLILDLLVFITINFVVLLGDL 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,310
Number of Sequences: 336
Number of extensions: 2341
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)