Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D18
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.39 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   2.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   3.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.3  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 195 CPAGTMNPWRL-FINLFRMKLXNSCYARSLK 106
           CP GT NP  L  +N F++ L NS   R +K
Sbjct: 91  CPKGTKNPGTLATVNAFKL-LRNSMGKRRVK 120


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 209 GSPFSTPAGCESELGFGHYEAS 274
           GS   TP     EL  GHY++S
Sbjct: 752 GSIVGTPVHMAPELLSGHYDSS 773


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 209 GSPFSTPAGCESELGFGHYEAS 274
           GS   TP     EL  GHY++S
Sbjct: 790 GSIVGTPVHMAPELLSGHYDSS 811


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 110 LSRHHRNGXTDKMPFNHYIIFS*SMXCI 27
           L+ HHRN  T +M     ++F   + CI
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWLPCI 343


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 252 PNSLSHPAGVEKGLPSPALCPAGTMNP 172
           P  LS P G  +G P   L    + NP
Sbjct: 622 PARLSLPKGQPQGFPLQFLVVISSSNP 648


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 214 AAIAGTVSCRNDESLA 167
           AA AG  SCR   SLA
Sbjct: 140 AATAGDKSCRYTASLA 155



 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 128 PAMPEALSRHHRNGXT 81
           P +   L  HH+NG T
Sbjct: 165 PMVNYTLGHHHQNGAT 180


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 105  PTPPKRXHRQN 73
            P PP R H QN
Sbjct: 1860 PPPPPRNHDQN 1870


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 266 HNGRSPTHFHIQLGW 222
           H+G+S +H H    W
Sbjct: 397 HSGQSSSHHHGSKSW 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,230
Number of Sequences: 438
Number of extensions: 1939
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)