Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D16
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    76   2e-15
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    25   2.8  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    24   8.5  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 75.8 bits (178), Expect = 2e-15
 Identities = 41/90 (45%), Positives = 53/90 (58%)
 Frame = -3

Query: 308 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 129
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 128 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRQ 39
             ++  R  YKNKKY PLDLR KKTRA+R+
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRR 92


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 116 NLRNHYKNKKYKPLDLRA-KKTRAMRQGSY 30
           ++  HY +K Y+P++L   K   +  QG+Y
Sbjct: 48  SMEGHYVSKDYQPINLSEWKNLTSQNQGAY 77


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 159 SFSYNTDLGQFRSNSTSNFSNPK 227
           +F+Y+ D G FR  + +NF +P+
Sbjct: 262 AFNYHFDNGVFRGLAFANFHSPE 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,764
Number of Sequences: 5004
Number of extensions: 17323
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)