Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_D16
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 84 3e-17
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 45 2e-05
12_01_0152 - 1168928-1169377 28 2.6
11_01_0155 - 1287003-1287452 28 2.6
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 4.5
12_02_0172 - 14891923-14892102,14892894-14892980 27 6.0
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 6.0
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 27 6.0
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 26 7.9
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 84.2 bits (199), Expect = 3e-17
Identities = 47/93 (50%), Positives = 57/93 (61%)
Frame = -3
Query: 317 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 138
M ++K ELR K+ L+ LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 137 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRQ 39
QK + LR YK K PLDLR KKTRA+R+
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRR 93
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 45.2 bits (102), Expect = 2e-05
Identities = 36/97 (37%), Positives = 47/97 (48%)
Frame = -3
Query: 329 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIAR 150
VTV M ++K LR ++ L+ LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 149 VYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRQ 39
Y K K PLDLR KKT A+R+
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRR 186
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 215 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 126
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 215 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 126
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 188 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 69
+SK ++K + R + HQ +K +L K +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 221 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYK 81
+A + GV K+S A R +V H+ +++ RNH ++KY+
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYR 49
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 123 HLLVIHNVNTCDSFSYNTDLG 185
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 146 YIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRQG 36
Y Y K+ N+R Y NK K ++ ++K R+G
Sbjct: 221 YRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREG 257
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +3
Query: 171 NTDLGQFRSNSTSNFSNPKI 230
NT+ G+++ + SNFS+P++
Sbjct: 1266 NTENGRYKGRAPSNFSSPRV 1285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,199,484
Number of Sequences: 37544
Number of extensions: 99611
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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