Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D15
         (484 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CPT8 Cluster: Putative uncharacterized protein; n=1; ...    34   1.5  
UniRef50_UPI00006CC891 Cluster: hypothetical protein TTHERM_0028...    34   1.9  
UniRef50_A5K9K8 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_A0CM10 Cluster: Chromosome undetermined scaffold_21, wh...    32   5.9  
UniRef50_A6Y1F0 Cluster: Transporter, major facilitator family; ...    32   7.8  

>UniRef50_Q5CPT8 Cluster: Putative uncharacterized protein; n=1;
           Cryptosporidium parvum Iowa II|Rep: Putative
           uncharacterized protein - Cryptosporidium parvum Iowa II
          Length = 104

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 153 LLVYNTIPHKPFASFYTTKTYCIHYLYVISLIYTCFGKHIFTNNXTIYFC 4
           LL Y   PH    SFY +  Y I+Y   IS+ Y  F  +   +  T++FC
Sbjct: 8   LLFYFPPPHT-LLSFYFSNIYSIYYFNAISIFYFLFYFNPQNSTQTLFFC 56


>UniRef50_UPI00006CC891 Cluster: hypothetical protein
           TTHERM_00289440; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00289440 - Tetrahymena
           thermophila SB210
          Length = 577

 Score = 33.9 bits (74), Expect = 1.9
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -1

Query: 376 NFYIVADKKNHINYIYKSIL-----IVQKTNTILLVTPALRSSMTNQCFVDCINLVVNNI 212
           N++ + D+++HI Y Y+  L     I+     I+LVT  +  ++     +D  N  +N  
Sbjct: 117 NYFFLLDEQSHIQYFYQEFLTFLFAIIIVQQHIILVTVKINKNLLQNSILDKFNTTLNTF 176

Query: 211 Y 209
           Y
Sbjct: 177 Y 177


>UniRef50_A5K9K8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 820

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 483 SCI*CMNTNYCFNXTFKYNLLCDFNVSRN 397
           SC  C N ++C+N    YN  C +N  RN
Sbjct: 430 SCNHCYNYDHCYNYDHCYNYSCSYNYDRN 458


>UniRef50_A0CM10 Cluster: Chromosome undetermined scaffold_21, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_21, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2376

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 25/88 (28%), Positives = 35/88 (39%)
 Frame = +1

Query: 82   MDTIRFSCVETCKWLVRDCIIHQ*INSHFFIKKSSMTS*NVECKYCLQLN*CNQRNTGLS 261
            +D     CV  C       I    IN  ++++ +   S    C  CL LN C +     S
Sbjct: 1026 VDVTCVQCVSPCLQCSASNICFSCINDSYYLQNNLCVSCASPCLTCLDLNTC-KTCVNDS 1084

Query: 262  YYFVKQESLTKLCLFSEQLKLTCKCN*Y 345
            YY+       KLCL      LTC+ + Y
Sbjct: 1085 YYYDGSVQQCKLCL---SPCLTCETDTY 1109


>UniRef50_A6Y1F0 Cluster: Transporter, major facilitator family;
           n=1; Vibrio cholerae RC385|Rep: Transporter, major
           facilitator family - Vibrio cholerae RC385
          Length = 398

 Score = 31.9 bits (69), Expect = 7.8
 Identities = 14/55 (25%), Positives = 31/55 (56%)
 Frame = -1

Query: 358 DKKNHINYIYKSILIVQKTNTILLVTPALRSSMTNQCFVDCINLVVNNIYTQRFK 194
           +K  +IN ++   + +  T+TILL+     ++M     + C NL++ N ++ +F+
Sbjct: 271 EKLKNINLVFIFGMALSATSTILLINGGSWTTMVAVIVIFCANLMMRNFFSIKFQ 325


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,742,492
Number of Sequences: 1657284
Number of extensions: 7690751
Number of successful extensions: 16271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16263
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)