Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D15
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    27   1.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   1.5  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   2.6  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   3.4  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    25   6.0  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   7.9  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   7.9  

>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 150 LVYNTIPHKPFASFYTTKTYCIHYLYVISLIYTCFGKHIFTNNXTIYFCK 1
           L  +T+P +   + Y T  + IH L  +S +Y   GK  F    +   CK
Sbjct: 159 LARDTVPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAFGTVKSDMECK 208


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 239  LH*FSCKQYLHSTF*DVIEDFFIKKWEFIY 150
            L+ F  +QYL  +  D++ED  ++ WE++Y
Sbjct: 1421 LNKFHSRQYLFLSR-DLVEDLSLRVWEYVY 1449


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 326 VNFNCSENKHNFVSDSCFTK*YDKPV 249
           VN   S+ KH F ++S  T  YD+P+
Sbjct: 690 VNLQFSKEKHEFTAESDDTTSYDEPL 715


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 376 NF-YIVADKKNHINYIYKSILIVQKTNTILLVTPALRSSMTNQCFVDCINLVVNNIY-TQ 203
           NF ++  D   +  ++Y+ ++   + N I  +      S  ++ F+D +    NNI  TQ
Sbjct: 63  NFRFLEMDLATNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILSTQ 122

Query: 202 RFKMSLRIFL*KNGNL 155
                +RI L K   L
Sbjct: 123 NLLECVRILLGKKEEL 138


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 338 IDMIFFISNNVKISIKVLGLFLDTL 412
           I +IFF  N + + + +LG+F+ TL
Sbjct: 555 IGIIFFALNAITMLLLILGIFIRTL 579


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 238 NQRNTGLSYYFVKQESLTKLCLFSEQLKLTCKC 336
           N++   +++ F+   S T+LC+      L C C
Sbjct: 168 NKKLLQITWNFLNDASRTRLCVLYPPFSLACGC 200


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 247 NTGLSYYFVKQESLTKLCLFSEQLKLTCKCN*YDFFYQQQCKN 375
           NT +S YF+++ + + +  F   +++  + +  D FY+   KN
Sbjct: 373 NTIISKYFIREITESNIVHFKRLVRVVLEASYSDKFYRLVLKN 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,930
Number of Sequences: 5004
Number of extensions: 37140
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)