Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D15
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    27   5.4  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 183 GFFYKKMGIYLLVYNTIPHKPFASFYTTKTYCIHYLYVISLIYTCF 46
           GF +  + I L    TIP     +F+    Y   +L  + L YTCF
Sbjct: 280 GFSFADVRIVLFAKETIPAGSELTFHYGPDYKEKFLEDLCLCYTCF 325


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 106 HN*NVLYPLSIRHIINIYLLWQTYIH 29
           HN  V++P+ + H ++ Y  +  YI+
Sbjct: 88  HNMEVIFPVKVFHFLHYYFAYAQYIY 113


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 81   NGYNTF*LCRNLQMACAGLYYTPINKFPFFYKKILNDI 194
            NGY  F +  + Q+A +G  Y P +  PF+Y K L DI
Sbjct: 960  NGY--FEIISDDQVAASGRIYIPEDNQPFYYGK-LEDI 994


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 106 HN*NVLYPLSIRHIINIYLLWQTYIH 29
           HN  V++P+ + H ++ Y  +  YI+
Sbjct: 88  HNMEVIFPVKVFHFLHYYFAYAQYIY 113


>AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical
           protein F57E7.3 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 373 FYIVADKKNHINYIYKSILIVQKTNTILLVTPALRSSM-TNQCFVDCINLVV 221
           FY+V      I + YK++  + KT TI   T  ++  +  N C    + LVV
Sbjct: 202 FYMVFTASQIIFFFYKTLTFLFKTRTISQKTTEMQKKLFINLCIQITVPLVV 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,635
Number of Sequences: 27780
Number of extensions: 206641
Number of successful extensions: 387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)