Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D12
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0002 - 6858257-6861205                                           29   2.1  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    29   2.7  
12_01_0944 - 9332033-9332314,9332560-9332872,9333827-9334035           27   6.3  

>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 489 DDDTVRSTPSHHRSRPVHV*RTPDDPQPV 403
           D+ +V S P HHR R V   R+P   +PV
Sbjct: 365 DERSVHSPPDHHRERRVERPRSPPRRRPV 393


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 477 VRSTPSHHRSRPVHV*RTPDDPQPV 403
           +RS PSHHR+  +HV +T +D +PV
Sbjct: 82  LRSWPSHHRA--LHVKKTIEDAEPV 104


>12_01_0944 - 9332033-9332314,9332560-9332872,9333827-9334035
          Length = 267

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 355 APAGCXGSXGLSXTRLDWLRIIW 423
           APA C GS G S  RL +  I+W
Sbjct: 47  APATCGGSGGRSLPRLRYWYILW 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,947,773
Number of Sequences: 37544
Number of extensions: 151927
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)