Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D11
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.68 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   6.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.3  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 693 LSVLENLDGVNQWDALSKNTESPRTSVLHNID 598
           ++  + L G NQ DAL KN E      L N+D
Sbjct: 112 IAYCQKLSGTNQADALWKNVEKDLKETLDNVD 143


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 254 LSSTSGNSCAKFLLSHGSSSML 319
           L S SGN C+K LLS+ S S L
Sbjct: 645 LRSNSGNLCSKDLLSNDSPSNL 666


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 699  GDLSVLENLDGVNQWDALSKNTESPRTSVLHNIDDIWGIAALTVDKYK 556
            G  S  +    VN   +L  N   P T  L+ ++DIW ++  T+D  K
Sbjct: 1077 GSRSWRDRESSVNTLVSLLSNV--PVTEYLNQLEDIWNMSFRTLDDIK 1122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,238
Number of Sequences: 5004
Number of extensions: 59251
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)