Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D11
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0086 + 13259130-13259218,13260993-13261632,13262607-13262723     29   5.0  
03_05_0905 - 28665838-28666422,28667073-28667156,28667335-286674...    29   5.0  
12_01_0822 + 7592752-7593255                                           28   8.7  
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    28   8.7  

>07_03_0086 + 13259130-13259218,13260993-13261632,13262607-13262723
          Length = 281

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -3

Query: 546 GTIYKGVWDNWYGPSGREGAYNASLLYDSHAGRILDKLNLMPPKEKVMELRDEATVKCN 370
           G IY+G  +    P+      + S+  D H+       NL PP+ +  + +D AT+KC+
Sbjct: 129 GNIYEGCNE----PAKEVDGRSLSVSGDLHSANETTIPNLEPPEIRAEQEKDNATIKCD 183


>03_05_0905 -
           28665838-28666422,28667073-28667156,28667335-28667410,
           28667497-28667600,28668673-28668735,28669312-28669317
          Length = 305

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 167 QYCGSPRASIGWAL-GATADTFSLCIXLRRLSSTSGNSCAKFLLSHGSSSMLKTHGASRG 343
           QY  S + S+G A+ G+          +  L+  S  + A+   S  SS+++     S G
Sbjct: 170 QYGVSEKISLGRAIVGSKVKEVDDRYQVSELTK-SALAAAEQKASIASSAIMNNQYVSAG 228

Query: 344 LHWMTSILSLHFTVASSLSSMT 409
             W+TS   +    A  +SSMT
Sbjct: 229 ASWLTSAFGMVTKAAGDMSSMT 250


>12_01_0822 + 7592752-7593255
          Length = 167

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -2

Query: 304 SVREKELSATVTRST*ESSERNAQAERIGRGAQRPTDRRPRRP 176
           +  E +LSA+  R+    ++ +AQA     GA+ PT RRPRRP
Sbjct: 120 ATNEDQLSAS--RAATSKAQDSAQAV----GARSPTRRRPRRP 156


>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 596 SSILCNTEVRGDSVFLDNASHWF 664
           S I+     RG  VFL NAS WF
Sbjct: 731 SDIVATLSFRGQRVFLHNASGWF 753


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,379,436
Number of Sequences: 37544
Number of extensions: 405208
Number of successful extensions: 1167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)