Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D11
         (725 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071072-1|AAL48694.1|  562|Drosophila melanogaster RE14504p pro...   165   7e-41
AE013599-1554|AAF58475.1|  542|Drosophila melanogaster CG8646-PA...   165   7e-41
AY122144-1|AAM52656.1|  365|Drosophila melanogaster HL07902p pro...    89   6e-18
AE014296-2983|AAF49287.1|  579|Drosophila melanogaster CG7402-PA...    89   6e-18
AE014296-2980|AAF49290.2|  585|Drosophila melanogaster CG7408-PB...    84   2e-16
AE014296-2965|AAN11683.1|  554|Drosophila melanogaster CG32191-P...    70   3e-12
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me...    30   3.7  
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro...    30   3.7  
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA...    30   3.7  
AE014134-677|AAF51061.1| 3115|Drosophila melanogaster CG3921-PA ...    29   6.4  
AY075227-1|AAL68094.1|  333|Drosophila melanogaster AT18116p pro...    29   8.5  
AY070714-1|AAL48185.1|  549|Drosophila melanogaster SD07907p pro...    29   8.5  
AE014297-181|AAF52069.1|  333|Drosophila melanogaster CG12590-PA...    29   8.5  
AE013599-1442|AAM68663.1|  839|Drosophila melanogaster CG30046-P...    29   8.5  

>AY071072-1|AAL48694.1|  562|Drosophila melanogaster RE14504p
           protein.
          Length = 562

 Score =  165 bits (400), Expect = 7e-41
 Identities = 85/205 (41%), Positives = 118/205 (57%), Gaps = 8/205 (3%)
 Frame = -3

Query: 723 PTLYSAAXGD--LSVL-ENLDGVNQWDALSKNTESPRTSVLHNIDDIWGIAALTVDKYKL 553
           PTL  AA G   LS L + +DG + W AL ++  SPR +VLHNIDDIWG AAL+V  +KL
Sbjct: 341 PTLLEAAGGQPALSNLSKQIDGQSIWRALVQDKASPRLNVLHNIDDIWGSAALSVGDWKL 400

Query: 552 IKGTIYKGVWDNWYGPSGREG--AYNASLLYDSHAGRILDKLNLMPPKEKVMELRDEATV 379
           +KGT Y+G WD WYGP+G      Y+  L+  S AG+ L+ L ++P +     +R  ATV
Sbjct: 401 VKGTNYRGSWDGWYGPAGERDPRLYDWQLVGRSRAGKALEALKMLPSRADQQRIRAAATV 460

Query: 378 KC-NDSIEVIQCKPR--DAPCVFNIDEDPCERRNXXXXXXXXXXXXXXXMHKLNVSAVAP 208
            C   S +   C      APC+F+I +DPCE+ N               + + N +AV P
Sbjct: 461 SCPGQSSQGTSCVATAFSAPCLFHIRDDPCEQYNLAKQYPEVVNALMTELERFNATAVPP 520

Query: 207 NAQPIDARGDPQYWGRVYTNFGXYE 133
           + +P D R DP++W   +TNFG Y+
Sbjct: 521 SNKPADPRADPRFWNYTWTNFGDYQ 545


>AE013599-1554|AAF58475.1|  542|Drosophila melanogaster CG8646-PA
           protein.
          Length = 542

 Score =  165 bits (400), Expect = 7e-41
 Identities = 85/205 (41%), Positives = 118/205 (57%), Gaps = 8/205 (3%)
 Frame = -3

Query: 723 PTLYSAAXGD--LSVL-ENLDGVNQWDALSKNTESPRTSVLHNIDDIWGIAALTVDKYKL 553
           PTL  AA G   LS L + +DG + W AL ++  SPR +VLHNIDDIWG AAL+V  +KL
Sbjct: 321 PTLLEAAGGQPALSNLSKQIDGQSIWRALVQDKASPRLNVLHNIDDIWGSAALSVGDWKL 380

Query: 552 IKGTIYKGVWDNWYGPSGREG--AYNASLLYDSHAGRILDKLNLMPPKEKVMELRDEATV 379
           +KGT Y+G WD WYGP+G      Y+  L+  S AG+ L+ L ++P +     +R  ATV
Sbjct: 381 VKGTNYRGSWDGWYGPAGERDPRLYDWQLVGRSRAGKALEALKMLPSRADQQRIRAAATV 440

Query: 378 KC-NDSIEVIQCKPR--DAPCVFNIDEDPCERRNXXXXXXXXXXXXXXXMHKLNVSAVAP 208
            C   S +   C      APC+F+I +DPCE+ N               + + N +AV P
Sbjct: 441 SCPGQSSQGTSCVATAFSAPCLFHIRDDPCEQYNLAKQYPEVVNALMTELERFNATAVPP 500

Query: 207 NAQPIDARGDPQYWGRVYTNFGXYE 133
           + +P D R DP++W   +TNFG Y+
Sbjct: 501 SNKPADPRADPRFWNYTWTNFGDYQ 525


>AY122144-1|AAM52656.1|  365|Drosophila melanogaster HL07902p
           protein.
          Length = 365

 Score = 89.0 bits (211), Expect = 6e-18
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 10/212 (4%)
 Frame = -3

Query: 723 PTLYSAAXGDLSVLENLDGVNQWDALSKNTESPRTSVLHNIDDIWGIAALTVDKYKLIKG 544
           PTL  AA   L     LDG+N W  LS N E    +++H +D+++G ++   D  K + G
Sbjct: 131 PTLAGAAGVSLPQDLPLDGINLWPMLSGNEEPKPRTMIHVLDEVFGYSSYMRDTLKYVNG 190

Query: 543 TIYKGVWDNWYGPSGREGAYNASLLYDSH--AGRILDKL-NLMPPKEKVMELRDEATVKC 373
           + +KG +D W G             Y+ H  A  +   L N    K+++ ++R EAT  C
Sbjct: 191 SSFKGRYDQWLGELETNEDDPLGESYEQHVLASDVQSLLGNRGLTKDRIRQMRSEATETC 250

Query: 372 ------NDSIEVIQCKPRDAPCVFNIDEDPCERRNXXXXXXXXXXXXXXXMHKLNVSAVA 211
                 N      +C+P  APC F++ +DPCER N               + ++  +A+ 
Sbjct: 251 PPIEGQNPLESHFKCEPLKAPCFFDLAKDPCERYNLAQMYPLQLQQLADELEQIRKTAIP 310

Query: 210 PNAQP-IDARGDPQYWGRVYTNFGXYETQHGS 118
               P  D+R +P +    +  +   +TQ GS
Sbjct: 311 SARVPHSDSRANPTFHNGNWEWWNNTDTQSGS 342


>AE014296-2983|AAF49287.1|  579|Drosophila melanogaster CG7402-PA
           protein.
          Length = 579

 Score = 89.0 bits (211), Expect = 6e-18
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 10/212 (4%)
 Frame = -3

Query: 723 PTLYSAAXGDLSVLENLDGVNQWDALSKNTESPRTSVLHNIDDIWGIAALTVDKYKLIKG 544
           PTL  AA   L     LDG+N W  LS N E    +++H +D+++G ++   D  K + G
Sbjct: 345 PTLAGAAGVSLPQDLPLDGINLWPMLSGNEEPKPRTMIHVLDEVFGYSSYMRDTLKYVNG 404

Query: 543 TIYKGVWDNWYGPSGREGAYNASLLYDSH--AGRILDKL-NLMPPKEKVMELRDEATVKC 373
           + +KG +D W G             Y+ H  A  +   L N    K+++ ++R EAT  C
Sbjct: 405 SSFKGRYDQWLGELETNEDDPLGESYEQHVLASDVQSLLGNRGLTKDRIRQMRSEATETC 464

Query: 372 ------NDSIEVIQCKPRDAPCVFNIDEDPCERRNXXXXXXXXXXXXXXXMHKLNVSAVA 211
                 N      +C+P  APC F++ +DPCER N               + ++  +A+ 
Sbjct: 465 PPIEGQNPLESHFKCEPLKAPCFFDLAKDPCERYNLAQMYPLQLQQLADELEQIRKTAIP 524

Query: 210 PNAQP-IDARGDPQYWGRVYTNFGXYETQHGS 118
               P  D+R +P +    +  +   +TQ GS
Sbjct: 525 SARVPHSDSRANPTFHNGNWEWWNNTDTQSGS 556


>AE014296-2980|AAF49290.2|  585|Drosophila melanogaster CG7408-PB
           protein.
          Length = 585

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 8/199 (4%)
 Frame = -3

Query: 723 PTLYSAAXGDLSVLENLDGVNQWDALSKNTESPRTSVLHNIDDIWGIAAL--TVDKYKLI 550
           PTL +AA        +LDG+N W AL    ES    ++H ID+      L  T  K+K+I
Sbjct: 354 PTLAAAAGISPDPALHLDGLNLWSALKYGYESVEREIVHVIDEDVAEPHLSYTRGKWKVI 413

Query: 549 KGTIYKGVWDNWYGPSGREGAYNASLLYDSHAGRILDKLNLMPP---KEKVMELRDEATV 379
            GT  +G++D W G          ++ Y+         L L      +  + ELRD++ +
Sbjct: 414 SGTTNQGLYDGWLGHRETSEVDPRAVEYEELVRNTSVWLQLQQVSFGERNISELRDQSRI 473

Query: 378 KCNDSIEVIQ-CKPRDAPCVFNIDEDPCERRN--XXXXXXXXXXXXXXXMHKLNVSAVAP 208
           +C D    ++ C P + PC+F+I+ DPCER N                 + +    A  P
Sbjct: 474 ECPDPATGVKPCLPLEGPCLFDIEADPCERSNLYAEYQNSTIFLDLWSRIQQFAKQAHPP 533

Query: 207 NAQPIDARGDPQYWGRVYT 151
           N +P D   DP+++   +T
Sbjct: 534 NNKPGDPNCDPRFYHNEWT 552


>AE014296-2965|AAN11683.1|  554|Drosophila melanogaster CG32191-PA
           protein.
          Length = 554

 Score = 70.1 bits (164), Expect = 3e-12
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
 Frame = -3

Query: 723 PTLYSAAXGDLSVLENLDGVNQWDALSKNTESPRT--SVLHNIDDIWGIAALTVDKYKLI 550
           PTL  AA  +L     LDG++ W  LS + ++P     +LH +DD+W ++AL + ++K +
Sbjct: 345 PTLSRAADIELDSSLKLDGIDLWPELSGSADAPHVPREILHILDDVWRLSALQMGQWKYV 404

Query: 549 KGTIYKGVWDN--WYGP----SGREGAYNASLLYDSHAGRILDKLNLMP-PKEKVMELRD 391
            GT   G +D+   Y        R+  Y A  + +S   R L + +L    ++++   R 
Sbjct: 405 NGTTASGRYDSVLTYRELDDLDPRDSRY-AVTVRNSATSRALSRYDLRRLTQQRISLTRR 463

Query: 390 EATVKCNDSIEVIQCKPRDAPCVFNIDEDPCERRN 286
            A V+C D      C P    C+++I  DPCE+ N
Sbjct: 464 LAAVRCGDLQR--SCNPLLEECLYDILSDPCEQNN 496


>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
            D.melanogaster RpII215gene encoding RNA polymerase II,
            largest subunit, completecds. ).
          Length = 1896

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 602  SMTSGVLQL*QLINTN*S-KAPSIKVFGTTGTGQAGEKALTML 477
            ++T GV +L ++IN +   KAPS+ VF T G  +  EKA  +L
Sbjct: 1108 NVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVL 1150


>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p
           protein.
          Length = 1429

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 602 SMTSGVLQL*QLINTN*S-KAPSIKVFGTTGTGQAGEKALTML 477
           ++T GV +L ++IN +   KAPS+ VF T G  +  EKA  +L
Sbjct: 650 NVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVL 692


>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
            protein.
          Length = 1887

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 602  SMTSGVLQL*QLINTN*S-KAPSIKVFGTTGTGQAGEKALTML 477
            ++T GV +L ++IN +   KAPS+ VF T G  +  EKA  +L
Sbjct: 1108 NVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVL 1150


>AE014134-677|AAF51061.1| 3115|Drosophila melanogaster CG3921-PA
            protein.
          Length = 3115

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -3

Query: 618  SVLHNIDDIWGIAALTVDKYKLIKGTIYKGVWDNWYGPSGREGAYNASLLYDSHAGRILD 439
            ++LHN+D ++ I +   D+ K+I  T       NW G +     Y  + L+  +    L 
Sbjct: 877  NILHNLDSMYEIGSQLTDQSKIINATC------NWLGHTDENKIY--ARLFHRNDRYNLA 928

Query: 438  KLNLMP 421
            K+N +P
Sbjct: 929  KINYLP 934


>AY075227-1|AAL68094.1|  333|Drosophila melanogaster AT18116p
           protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 317 LKTHGASRGLHWMTSILSLHFTVASSLSSMTF 412
           L+ H  S+G+ WM ++L++  T    L  +TF
Sbjct: 121 LQRHKLSQGMEWMPTVLAIIHTKRFDLQGLTF 152


>AY070714-1|AAL48185.1|  549|Drosophila melanogaster SD07907p
           protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 343 ASRCAVRLQHRRGSVREKELSATVTRST*ESSERNAQAERIGR 215
           +S+C V +Q+RR   ++ EL+     +  +  ER  Q E  G+
Sbjct: 143 SSKCGVGMQYRRRVYKQPELARVYNCNEAQYEERECQGEMCGQ 185


>AE014297-181|AAF52069.1|  333|Drosophila melanogaster CG12590-PA
           protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 317 LKTHGASRGLHWMTSILSLHFTVASSLSSMTF 412
           L+ H  S+G+ WM ++L++  T    L  +TF
Sbjct: 121 LQRHKLSQGMEWMPTVLAIIHTKRFDLQGLTF 152


>AE013599-1442|AAM68663.1|  839|Drosophila melanogaster CG30046-PB
           protein.
          Length = 839

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 343 ASRCAVRLQHRRGSVREKELSATVTRST*ESSERNAQAERIGR 215
           +S+C V +Q+RR   ++ EL+     +  +  ER  Q E  G+
Sbjct: 433 SSKCGVGMQYRRRVYKQPELARVYNCNEAQYEERECQGEMCGQ 475


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,779,953
Number of Sequences: 53049
Number of extensions: 670099
Number of successful extensions: 1898
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)