Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D11
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-51|CAE18031.2|  281|Caenorhabditis elegans Hypothetical p...    31   0.63 
AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    30   1.5  
U50308-8|AAG24032.1|  562|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>Z99281-51|CAE18031.2|  281|Caenorhabditis elegans Hypothetical
           protein Y57G11C.48 protein.
          Length = 281

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = +3

Query: 480 HCKRLLSRLARTSCPKHLYRWCL*LICIYQLSKLQYPRCHRYCAIQRCAETLCSWT 647
           H    ++R+  T C   L   CL    I+ L K   PR    CAI RCA TL SW+
Sbjct: 94  HACENIARMVLTHCRHRLCYDCLLDKVIFALEKKFPPR----CAISRCANTL-SWS 144


>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 49  VRFFI--YIDA*KVLHIYVTSQTNARAVLRFVXAEVSVDPAPVLRVAAGVYRLGVGRHGR 222
           ++F+I  +I   K + +YV S T+    +  +   +S + AP  +V    YRL V R GR
Sbjct: 212 LKFWIKGFIQHLKCVELYVESDTSDLQNIAILFKNISYEEAPNDKVFEYKYRL-VCRGGR 270

Query: 223 YVQ 231
           Y+Q
Sbjct: 271 YIQ 273


>U50308-8|AAG24032.1|  562|Caenorhabditis elegans Hypothetical
           protein F07C3.10 protein.
          Length = 562

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 555 ICIYQLSKLQYPRCHRYCAIQRCAE 629
           +C  ++S++  PR  RYC +Q+C E
Sbjct: 78  MCFSKISRITRPRKCRYCRLQKCYE 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,198
Number of Sequences: 27780
Number of extensions: 337380
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)