Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_D09
(384 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 7e-09
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48) 38 0.004
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4) 31 0.32
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 3.0
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06) 27 6.9
SB_25706| Best HMM Match : Mak16 (HMM E-Value=2.8) 26 9.2
SB_50834| Best HMM Match : GCR (HMM E-Value=2.5) 26 9.2
>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 56.4 bits (130), Expect = 7e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = -2
Query: 332 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 219
M K ++KG+SAINEVVTREYT+NLHKR+HG+ R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806
Score = 39.5 bits (88), Expect = 0.001
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = -2
Query: 257 LHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFXXXX 84
+H G F + K ++K +K+ + V TR K + NVP+
Sbjct: 750 IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809
Query: 83 XXXXXRNDDEDSAHKLFTLVTYVPVA 6
RN+DEDS HKL+TLVT V V+
Sbjct: 810 RLARKRNEDEDSPHKLYTLVTSVAVS 835
>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
Length = 776
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -2
Query: 107 NVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVA 6
NVP+ RN+DEDS HKL+TLVT V V+
Sbjct: 2 NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVS 35
>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
Length = 235
Score = 31.1 bits (67), Expect = 0.32
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = +1
Query: 166 VPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVILS 345
VP C + +SL+AL PT C L S V S D+P S +GL++ LS
Sbjct: 46 VPTCSLID--LSLVALSVNLDVPT-----CSLFDLSLVALSMNLDVPTCSLIGLSLFALS 98
Query: 346 FVYRIPSAGRIHL 384
+P+ I L
Sbjct: 99 INLNVPTCSLIDL 111
Score = 27.9 bits (59), Expect = 3.0
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +1
Query: 166 VPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVILS 345
VP C + +SL AL PT C L S V S D+P S + L++V LS
Sbjct: 141 VPTCSLID--VSLFALSVNLNVPT-----CSLIDLSLVALSINLDVPTCSLIDLSLVALS 193
Query: 346 FVYRIPSAGRI 378
+P+ +
Sbjct: 194 INLDVPAGSLV 204
Score = 27.1 bits (57), Expect = 5.2
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +1
Query: 166 VPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVILS 345
VP C + +SL+AL PT C L S V S D+P S + +++ LS
Sbjct: 103 VPTCSLID--LSLVALSVNLNVPT-----CSLIDLSLVAISVNLDVPTCSLIDVSLFALS 155
Query: 346 FVYRIPSAGRIHL 384
+P+ I L
Sbjct: 156 VNLNVPTCSLIDL 168
>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 28.3 bits (60), Expect = 2.3
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -2
Query: 377 IRPADGIRYTKLKITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKE 198
I PA I T + A + K K INEV+T Y + L KR R IKE
Sbjct: 191 ITPA-AIDETASTLNFASRAKKIKNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKE 249
Query: 197 IRK 189
+ +
Sbjct: 250 LEE 252
>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 927
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 112 TPLDQRNLFKRVSTRMSGVPICFSANF 192
TP D N R T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 210 SNQRNPKVR*KTDGNSGHSSRHSLKQIPLV*GSQKCSLPCPCEAFT 73
S ++ ++ D GH + ++Q PL K LPC FT
Sbjct: 349 SKKKKQGIQGSADAEQGHHEQSLVRQRPLFAPLPKLRLPCQYNPFT 394
>SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 26.6 bits (56), Expect = 6.9
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -2
Query: 344 LKITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGV-GFKKRAPRAIKEIRKFAE--KQ 174
+ + + K K R+ NE + REY LHK L + F PR R + KQ
Sbjct: 91 IALVIEKDKSLRRKIEEENEQLKREYLQQLHKTLEALRTFDFNNPRDAIFKRNLVKMHKQ 150
Query: 173 MGTPDIRVDTRLN 135
+G +RV +N
Sbjct: 151 VGNYCLRVYGEMN 163
>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
Length = 438
Score = 26.6 bits (56), Expect = 6.9
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +1
Query: 127 RNLFKRVSTRMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLP 306
RNL KRV R P C + R + + L R CK +V S +T+ +
Sbjct: 214 RNLAKRVHERFGDAPGCEFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTNSSSKER 273
Query: 307 FLSPLGLAI 333
++ PL I
Sbjct: 274 WMGPLASCI 282
>SB_25706| Best HMM Match : Mak16 (HMM E-Value=2.8)
Length = 405
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -2
Query: 377 IRPADGIRYTKLKITMAKPKGERKGKSAINEVVTREYTVNLH 252
I+P DGI KI KGE K S I + R LH
Sbjct: 304 IQPLDGILSLMDKICYHTQKGESKRSSRIRTLNRRSCVFKLH 345
>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
Length = 909
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 326 KPKGERKGKSAINEVVTREYTVNLHK 249
KPKG+ +G NEV +++ TV + K
Sbjct: 299 KPKGQPQGSRPSNEVQSKDSTVMISK 324
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,157
Number of Sequences: 59808
Number of extensions: 222726
Number of successful extensions: 407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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