Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D07
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical p...    85   5e-17
U41531-5|AAA83159.3|  432|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z92826-7|CAD90171.2|   99|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U00051-8|AAA91356.1|  687|Caenorhabditis elegans Aldehyde dehydr...    28   6.2  

>Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical
           protein F49C12.13 protein.
          Length = 86

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
 Frame = -2

Query: 607 PIFAPKGPXRGIIQVVLILTAATCWLFWLCAYMAQMNPLIGPRLSNETLIWISRTWG--- 437
           P   PKGP RGIIQ+++I+TA  CW+FW+  ++ Q+NPLIGP+++ +T+ WIS  WG   
Sbjct: 22  PWIVPKGPNRGIIQLMIIMTAVCCWMFWIMVFLHQLNPLIGPQINVKTIRWISEKWGDAP 81

Query: 436 NKINN 422
           N INN
Sbjct: 82  NVINN 86


>U41531-5|AAA83159.3|  432|Caenorhabditis elegans Hypothetical
           protein T07D1.2 protein.
          Length = 432

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 433 KINNTQA*SSDLK-SPCRGLVGWFKNVTMIVKSY**MQMQ-FLNLNLITYCNICRILVYL 260
           K+N  +A + +++ + C  L+ W KN+ M+  S   M+ + FLN NL       +IL+  
Sbjct: 28  KVNAIRACAGEIRFNACEYLINWSKNLEMVENSLINMRTKLFLNYNLEEVSITGQILMET 87

Query: 259 YSSKINKV 236
            + +  KV
Sbjct: 88  AAERAAKV 95


>Z92826-7|CAD90171.2|   99|Caenorhabditis elegans Hypothetical
           protein C18D11.6 protein.
          Length = 99

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 430 FCFPKCVKSRLGFHC*VWAR*EGSSVP 510
           FC P  +K ++G H   W + E S  P
Sbjct: 23  FCAPATLKEKVGDHALTWTKVEASQTP 49


>U00051-8|AAA91356.1|  687|Caenorhabditis elegans Aldehyde
           dehydrogenase protein11, isoform a protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 115 ICESKRKENYYCSQ--NLI*QFLGTDYKNWPQIQIN 216
           +  S  KE+YYCSQ      +F G D K WP   +N
Sbjct: 105 LINSDGKESYYCSQLITAAFEFAGVDMK-WPAHTLN 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,600
Number of Sequences: 27780
Number of extensions: 280355
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)