Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D05
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    28   1.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    28   1.4  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.7  

>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +1

Query: 316 FCKFTGDIFKTS*PGRLRSASIDK*KT*AFV*NKLKTNKRNPCQTGDTSKEKQYCYFYLI 495
           FCK     F+ S   +L SASI       F+  K   NK+    T D +K+K   Y  L+
Sbjct: 555 FCKLND--FQESILLQLLSASIQTVCNNNFITPKTVHNKQAAETTNDQNKDKDLLYLNLL 612

Query: 496 PNIS 507
           P I+
Sbjct: 613 PYIN 616


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 559  PKLAKSVQPFSSFSETNEQQFIYIYLDFEKI 651
            P+L +S++P+ S  + + Q+FI+  L+F  +
Sbjct: 920  PQLVRSLKPYISVLKQDHQEFIFAGLNFPSV 950


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -1

Query: 295 PSTHRYYVTIVSIWYA 248
           PS+H++ +T++S W+A
Sbjct: 201 PSSHQWLLTVMSFWWA 216


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 377  QSINKRPKLLYKINLKQTKGIP 442
            +++ K+ KLL K+NL+Q + IP
Sbjct: 1741 ETVKKQEKLLKKLNLRQEQLIP 1762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,066
Number of Sequences: 5004
Number of extensions: 43913
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)