Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D04
         (397 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q59NL2 Cluster: Putative uncharacterized protein; n=1; ...    33   2.7  
UniRef50_A2X938 Cluster: Putative uncharacterized protein; n=3; ...    32   3.5  
UniRef50_A6M9C0 Cluster: O antigen polymerase; n=1; Escherichia ...    32   4.6  
UniRef50_A0W3U8 Cluster: Drug resistance transporter, EmrB/QacA ...    31   6.1  
UniRef50_Q86S91 Cluster: Xylanase xynA; n=1; Epidinium caudatum|...    31   6.1  

>UniRef50_Q59NL2 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 108

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 234 PFYYILLLAINCNNFTSLI 290
           PFYY LLL IN NN+T+++
Sbjct: 39  PFYYYLLLIINYNNYTTIV 57


>UniRef50_A2X938 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 356

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 45  EIISTGCVKDFPESTEGSCIRRTHRYSPGELHRHIQIFKTQPC--HWT 182
           +II + CV    ++ E S I  T R+SP E H+H ++++ Q    HW+
Sbjct: 190 QIIQSPCVS--LQANENSMILTTSRFSPQESHQHDRLYEEQISTEHWS 235


>UniRef50_A6M9C0 Cluster: O antigen polymerase; n=1; Escherichia
           coli|Rep: O antigen polymerase - Escherichia coli
          Length = 347

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 370 YLCTYIYLLFLQSNYLRFELLKILFQPISDVKLLQFIAN 254
           Y C  +Y+L L +N  R +  K LF  +S + L++F+ N
Sbjct: 300 YACDLVYILILINNANRLKNKKTLFMCLSLIALIRFVKN 338


>UniRef50_A0W3U8 Cluster: Drug resistance transporter, EmrB/QacA
           subfamily precursor; n=1; Geobacter lovleyi SZ|Rep: Drug
           resistance transporter, EmrB/QacA subfamily precursor -
           Geobacter lovleyi SZ
          Length = 480

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 111 FSGYRSPQYSLGNL*HNLCLLFLSSINEIRYLYMI 7
           +S +RSP ++ GNL + LCL +L+  N I   Y++
Sbjct: 263 YSLFRSPAFNYGNLANFLCLCYLAGHNFITPFYLM 297


>UniRef50_Q86S91 Cluster: Xylanase xynA; n=1; Epidinium
           caudatum|Rep: Xylanase xynA - Epidinium caudatum
          Length = 516

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 164 CFEDLNVPVEFSG*ISVGSPDTGALSTLWEIFDTTCAYYF 45
           C E  N+  E  G I++  PDTGA +  WEI D    Y F
Sbjct: 437 CLEVYNLSKENGGNIAIW-PDTGATNQRWEIQDAGNGYVF 475


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,989,223
Number of Sequences: 1657284
Number of extensions: 7061716
Number of successful extensions: 16900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16900
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)