Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D04
         (397 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   3.4  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   4.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   5.9  

>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 395 NELIWLKMLLMYLHIFVIFTI*LFKV 318
           NE+  L +LLM+   F+I T  +F +
Sbjct: 237 NEIFGLGLLLMFAVSFLIITQVIFVI 262


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 103 SGEPTDIHPE 132
           +GEPTD+ PE
Sbjct: 218 TGEPTDLTPE 227


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 104 PENPPIFTRRTPPAHSNLQNTALSLDV 184
           P+N P FT  +      L+N A  L +
Sbjct: 735 PKNRPTFTELSKSLEGLLENVAQYLQI 761


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,102
Number of Sequences: 336
Number of extensions: 2079
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)