Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D04
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   1.8  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   1.8  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   3.2  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   4.3  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   4.3  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    24   7.4  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    24   7.4  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    24   9.8  

>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 355 IYLLFLQSNYLRFELLKILFQPISDVKLLQFIANSS 248
           IY  F  S YLR  LL  ++  ISD K   + +  S
Sbjct: 122 IYATFHISTYLRSVLLPAIYPNISDAKTASYASRVS 157


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 198 FCAFKSI-KVEKSPFYYILLLAINCNNFTSLI 290
           +C +KS+ + + +P YY  L+     N  SLI
Sbjct: 406 YCTYKSLMRTQFAPHYYYALVPFRATNTASLI 437


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 142 RWSSPGEYRWVLRIQEPSVLSGKSLTQPVLI 50
           RW    EY W   +     L+  SLT PV I
Sbjct: 338 RWCRVKEYSWNTSVLSDEALTRNSLTLPVPI 368


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 118 DIHPENSTGTFKSSKHSL 171
           D  PEN+T  F+S+K SL
Sbjct: 158 DFSPENTTNLFRSAKTSL 175


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 319 FELLKILFQPISDVKLLQFIANSSM**KGLFSTLIL 212
           F LLKILF  +  + LLQFI  S    +G FS +++
Sbjct: 548 FSLLKILFISLCILCLLQFIVYSYFHREG-FSVILM 582


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 63  CVKDFPESTEGSCIRRTHRYSPGELHRHIQIFKTQ-PCHWTL*PLLFCAFKSIKVEKSPF 239
           C K  P+ ++ SCIR     +P  +   IQ+ +T   C       +  +F S  + K+  
Sbjct: 226 CFKSSPKHSKTSCIRTVDWKNPPTI-LQIQLERTSYTCQGLTRNNVSISFPSKLILKNKH 284

Query: 240 YYIL 251
           +YIL
Sbjct: 285 HYIL 288


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 177 WTL*PLLFCAFKSIKVEKSPFYYILLLAINCNNFTSLIG*NKIFKSSNLK*LDCKNN 347
           WT   L     +++  +   F ++  L IN NN T L    +I K  NL  LD   N
Sbjct: 160 WTCLDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLP--PEIGKLKNLVILDASGN 214


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 97  PVSGEPTDIHPENSTGTFKSSKHSLVIGRCNPCSFAPSKVLRLKKVL 237
           PVSG   + HP   +    +S+ S++I R    S   SK  RL K L
Sbjct: 619 PVSGHTNNAHPLRLSTEISASQLSMIIER----SVELSKHKRLNKEL 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,755
Number of Sequences: 5004
Number of extensions: 32153
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)