Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D04
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007...    30   0.78 
02_01_0429 - 3132848-3135043                                           30   0.78 
02_01_0428 - 3127098-3129254                                           30   0.78 
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    30   0.78 
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322...    28   3.1  
12_02_0226 + 15887835-15891188                                         27   7.2  

>02_05_0577 -
           30100084-30100251,30100474-30100548,30100631-30100755,
           30101538-30101609,30102016-30102108,30102333-30102419,
           30103049-30103135,30103448-30103522,30104142-30104238
          Length = 292

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 81  ESTEGSCIRRTHRYSPGELHRHIQIFKTQPC--HWT 182
           ++ E S I  T R+SP E H+H ++++ Q    HW+
Sbjct: 234 QANENSMILATSRFSPQESHQHDRLYEEQISTEHWS 269


>02_01_0429 - 3132848-3135043
          Length = 731

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 364 CTYIYLLFLQSNYLRFELLKILFQPISDVKLLQFIANS 251
           CT + +L L+ NYL  +L KI F  +S++ ++  + N+
Sbjct: 325 CTNLKILDLKINYLSGDLGKINFSSLSNLMIIDLLVNN 362


>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 364 CTYIYLLFLQSNYLRFELLKILFQPISDVKLLQFIANS 251
           CT + +L L+ NYL  +L KI F  +S++ ++  + N+
Sbjct: 312 CTNLKILDLKINYLSGDLGKINFSSLSNLMIIDLLVNN 349


>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 364 CTYIYLLFLQSNYLRFELLKILFQPISDVKLLQFIANS 251
           CT + +L L+ NYL  +L KI F  +S++ ++  + N+
Sbjct: 748 CTNLKILDLKINYLSGDLGKINFSSLSNLMIIDLLVNN 785


>01_01_0425 +
           3221303-3222602,3222710-3222928,3223010-3223114,
           3223274-3223403,3223524-3224464,3224971-3225257
          Length = 993

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 237 FYYILLLAINCNNFTSLIG*NKIFKSSNLK*LDCKNNKYM*VHK*HFKPYQFI 395
           F+++  LA++ NNF       KIF+  NL+ LD   N  + V    F P +++
Sbjct: 252 FFFLSDLALSNNNFEGQFP-TKIFQVENLRSLDVSFNPTLFVQLPDFPPGKYL 303


>12_02_0226 + 15887835-15891188
          Length = 1117

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 55  AQVVSKISQRVLRAPVSGEPTDIHPENSTGTFKSSKHSLVIGRC 186
           ++VV ++++ VLRA V G   +   EN   T+     SLV+ RC
Sbjct: 176 SEVVHRVTE-VLRAEVPGLSVEQRLENLGVTYTPRLVSLVLNRC 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,564,542
Number of Sequences: 37544
Number of extensions: 180190
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)