Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D04
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   9.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 98  LYPENPPIFTRRTPPAHSNLQNTALSLDVVTLAL 199
           L PE+P ++ +  PP     Q T +   V  + L
Sbjct: 40  LLPEDPKLYDKMRPPKKDG-QATVVYFHVTVMGL 72


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 369 TYVPTYICY 343
           T +PTYICY
Sbjct: 652 TSMPTYICY 660


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 104 PENPPIFTRRTPPAHSNLQN 163
           P NP IF       HS L N
Sbjct: 415 PANPDIFRVSCATEHSQLTN 434


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 104 PENPPIFTRRTPPAHSNLQN 163
           P NP IF       HS L N
Sbjct: 121 PANPDIFRVSCATEHSQLTN 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,126
Number of Sequences: 438
Number of extensions: 2238
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)