Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D02
         (601 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CD1A0 Cluster: hypothetical protein TTHERM_0012...    33   5.1  
UniRef50_A0CEI0 Cluster: Chromosome undetermined scaffold_171, w...    33   5.1  

>UniRef50_UPI00006CD1A0 Cluster: hypothetical protein
           TTHERM_00129060; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00129060 - Tetrahymena
           thermophila SB210
          Length = 376

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 391 ILEPLKISLLFNHLNNVKFMIYKNYQILIKILGMTYHN 504
           +LE   + +LF +  N+ F IYK  Q+   ILG TY N
Sbjct: 157 LLEQESVQILFKNPLNIDFNIYKLIQLETLILGYTYFN 194


>UniRef50_A0CEI0 Cluster: Chromosome undetermined scaffold_171,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_171,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 493

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 281 INTITGFIYVYCFMLML--GKYYMT*FFFSCVPSLCKWKFW 397
           IN I  FI++YCFM+ +  G  YM       +P +C WKF+
Sbjct: 142 INNIYAFIFIYCFMVGIPSGLVYM-------LPIICGWKFF 175


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,795,023
Number of Sequences: 1657284
Number of extensions: 9822133
Number of successful extensions: 16192
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16184
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)