Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_D02
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    28   5.9  
U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 358 KKLCHVILT*HKHKTIYIYKSSYCINFVKLNVT*IFQIRILMKIQ*LPNSSNVW 197
           K+ C +I+   K   I  +   YC  FV  N   I  I ++  +     S N +
Sbjct: 379 KQFCRIIIRIKKQVKILSFHKIYCFKFVLYNTRTIVNIDLVQSVSSRNQSENAF 432


>U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical
           protein T14B4.9 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 394 LEPLKISLLFNHLNNVKFMIYKNYQILIKILGMTYH 501
           L PLKI ++F  +      +YK+Y+ L K + M+YH
Sbjct: 101 LRPLKIGVVFARV------VYKDYEFLEKQVQMSYH 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,941,688
Number of Sequences: 27780
Number of extensions: 263747
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)