Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C24
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111... 45 4e-05
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570... 45 4e-05
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 44 1e-04
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 43 2e-04
08_02_0714 + 20343864-20344385,20344928-20345098,20345933-203459... 43 2e-04
08_02_0970 - 23140109-23140192,23140604-23140657,23140783-231407... 42 4e-04
08_02_0711 + 20305341-20305859,20306278-20306448,20306995-203070... 42 5e-04
08_02_0710 + 20275834-20276352,20276970-20277140,20277692-202777... 42 5e-04
11_01_0330 + 2472195-2472743 38 0.006
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 38 0.008
03_02_0303 - 7261340-7261807 31 0.92
03_01_0317 + 2492030-2492591,2493189-2493249,2493951-2494066,249... 30 1.6
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 28 4.9
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 27 8.6
>08_02_0967 -
23110154-23110240,23110620-23110673,23111010-23111177,
23111432-23111534,23111664-23111988,23112091-23112181
Length = 275
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -2
Query: 476 FYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGR 297
+Y Y GSLTTPPC + V W I +S +Q+D R + + + +N R LQ + R
Sbjct: 206 YYRYMGSLTTPPCTQGVVWTIVKRVRTVSRYQLDLLREAVHD---EMENNARPLQAVNNR 262
Query: 296 RVFV 285
+ +
Sbjct: 263 DISI 266
>02_04_0092 +
19655747-19655825,19656362-19656567,19656990-19657096,
19657189-19657291,19657699-19657881,19657972-19658094
Length = 266
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/64 (40%), Positives = 33/64 (51%)
Frame = -2
Query: 482 ERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLF 303
+R++ Y GSLTTPPC E V W IF + I + L + L+ N R QPL
Sbjct: 201 DRYFRYVGSLTTPPCTENVIWNIFGE---IREMTKEQAAALRAPLHGSYRHNRRPTQPLN 257
Query: 302 GRRV 291
GR V
Sbjct: 258 GRTV 261
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/65 (41%), Positives = 31/65 (47%)
Frame = -2
Query: 485 TERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPL 306
T +Y Y GSLTTPPC E V W I S S Q+D LL + + N R Q L
Sbjct: 223 TSGYYRYDGSLTTPPCTEGVIWTIMSKIGDASKEQID----LLKTVATTVEPNARPAQKL 278
Query: 305 FGRRV 291
R V
Sbjct: 279 NDRIV 283
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/66 (43%), Positives = 34/66 (51%)
Frame = -2
Query: 485 TERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPL 306
T ++ Y GSLTTPPC E V W + IS Q+ LL + LP D R QPL
Sbjct: 384 TGSYFRYGGSLTTPPCGENVVWSVLGKVREISQEQLH----LLMS-PLPTKD-ARPAQPL 437
Query: 305 FGRRVF 288
GR VF
Sbjct: 438 NGRAVF 443
>08_02_0714 +
20343864-20344385,20344928-20345098,20345933-20345986,
20346300-20346386
Length = 277
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = -2
Query: 476 FYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGR 297
+Y Y GSLTTPPC E V W I +S+ Q+ + + N N N R LQ + R
Sbjct: 208 YYRYMGSLTTPPCTEGVIWTIVRKVHTVSLSQLALLKAAVVNGN---EKNARPLQDVNNR 264
Query: 296 RV 291
+
Sbjct: 265 NI 266
>08_02_0970 -
23140109-23140192,23140604-23140657,23140783-23140794,
23140842-23141009,23141371-23141473,23141574-23141680,
23143766-23143977,23144136-23144223
Length = 275
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -2
Query: 476 FYTYKGSLTTPPCAEAVTWVIFSDYL----PISVFQMDNFRGLLSNLNLPLVDNFRQLQP 309
+Y Y GSLTTPPC E V W +F ++ +Q+D R +++ +N R LQ
Sbjct: 203 YYRYMGSLTTPPCTEGVIWTVFKRVFLLAQTVAQYQLDLLREAVAD---GYENNARPLQK 259
Query: 308 LFGRRVFVRI 279
+ R + + I
Sbjct: 260 VNNRNISIFI 269
>08_02_0711 +
20305341-20305859,20306278-20306448,20306995-20307048,
20307389-20307475
Length = 276
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -2
Query: 506 SILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRG--LLSNLN--LP 339
++ G DT +Y Y GS TTPPC E V W + +S+ Q+ + L+ N N P
Sbjct: 198 NVAKGKDTV-YYRYMGSFTTPPCTEGVIWTVVRKVHTVSLSQITLLKAAVLMGNENNARP 256
Query: 338 LVD-NFRQLQPLF 303
L D N R++ F
Sbjct: 257 LQDVNNREIDLFF 269
>08_02_0710 +
20275834-20276352,20276970-20277140,20277692-20277745,
20277848-20277934
Length = 276
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = -2
Query: 506 SILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDN 327
++ G DT +Y Y GS TTPPC E V W + +S+ Q+ + + N +N
Sbjct: 198 NVAKGQDTV-YYRYMGSFTTPPCTEGVIWTVVRKVRTVSLSQITLLKAAVLTGN---ENN 253
Query: 326 FRQLQPLFGRRV 291
R LQ + R +
Sbjct: 254 ARPLQGVNNREI 265
>11_01_0330 + 2472195-2472743
Length = 182
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/65 (40%), Positives = 32/65 (49%)
Frame = -2
Query: 485 TERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPL 306
T ++ Y GSLT PPC E V W + IS Q+ L++ L LP R QPL
Sbjct: 110 TGSYFRYAGSLTAPPCTEDVFWSVLGKIRQISQEQV----ALITAL-LP-AGGARPTQPL 163
Query: 305 FGRRV 291
GR V
Sbjct: 164 NGRTV 168
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2
Query: 476 FYTYKGSLTTPPCAEAVTWVI 414
+Y Y GSLTTPPCAE V W I
Sbjct: 202 YYRYVGSLTTPPCAENVIWNI 222
>03_02_0303 - 7261340-7261807
Length = 155
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 301 VAVSSSESHQRTLSSRRPNSTTPNGTGLD 215
V V S ES +R L +RPN + NG G D
Sbjct: 24 VFVPSPESFRRVLKLQRPNDSATNGNGAD 52
>03_01_0317 +
2492030-2492591,2493189-2493249,2493951-2494066,
2494662-2495176
Length = 417
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -2
Query: 311 PLFGRRVFVRITSKNPKFKKT----KLHYSKWD 225
PL R+ F + +P+F +T LHYSKWD
Sbjct: 280 PLPHRKYFQTVLCNSPEFNRTVVNHDLHYSKWD 312
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 280 SHQRTLSSRRPNSTTPNGTGLDTRSPKMTSST 185
S TL+ R P + PNG G+ +P + T
Sbjct: 533 SSNETLAEREPKTEVPNGGGISAAAPLSSDET 564
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 135 YYLSVVIGYIYIYLFIE---VDDVIFGLLVSNPVPFGVVEFGLL 257
Y + ++GY IY+F++ + IF L++ + FGVV+ G+L
Sbjct: 97 YQANFILGYCSIYIFMQTFMIPGTIFMSLLAGAL-FGVVKGGIL 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,903,733
Number of Sequences: 37544
Number of extensions: 305018
Number of successful extensions: 671
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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