Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C24
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.98 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.2  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 241 WSLVFLNLGFFDVILTKTRRPNN 309
           W  VFL +G F V+L  T   N+
Sbjct: 3   WQRVFLAVGLFGVLLLLTNADNS 25


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = +2

Query: 362 DHG-NYPFETRKWAG 403
           DH  NYPF+  +W G
Sbjct: 64  DHTKNYPFDVDQWRG 78


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 256 RRPNSTTPNGTGLDTRSPKMTSSTSM 179
           RRP        G+ ++SP +T S +M
Sbjct: 583 RRPQRACSTTGGVPSKSPTLTHSPTM 608


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 235  PNGTGLDTRSPKMTSST 185
            P+G G+ T+  K+TSS+
Sbjct: 1123 PSGGGIYTKDTKITSSS 1139


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 555 MCARVLLSAAAYFLLV 508
           +C  +LLS   +FLL+
Sbjct: 269 LCINILLSQTMFFLLI 284


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 555 MCARVLLSAAAYFLLV 508
           +C+ +LLS   +FLL+
Sbjct: 283 LCSSILLSLTVFFLLL 298


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 354 GKKTTEIIHLKHGN 395
           GKK TEII+  H N
Sbjct: 48  GKKLTEIINETHEN 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,234
Number of Sequences: 438
Number of extensions: 3088
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)