Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C22
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...   199   1e-53
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.7  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.3  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score =  199 bits (486), Expect = 1e-53
 Identities = 99/123 (80%), Positives = 109/123 (88%), Gaps = 1/123 (0%)
 Frame = -3

Query: 616 MXRIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEADKNDKAVKDLVILLYET 437
           M RIMKAQALRDTSTMGYMAAKKHLEINPD SI++ LRQKAEADKNDKAVKDLVILL+ET
Sbjct: 599 MERIMKAQALRDTSTMGYMAAKKHLEINPDPSILKNLRQKAEADKNDKAVKDLVILLFET 658

Query: 436 ALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLE-GDADDASRME 260
           ALLSSGFTLDEPQVHASRIYRMIKLGLGIDE+E +  E+   GD P  +  +++DASRME
Sbjct: 659 ALLSSGFTLDEPQVHASRIYRMIKLGLGIDEEEAMITEDAQGGDAPSADAAESEDASRME 718

Query: 259 EVD 251
           EVD
Sbjct: 719 EVD 721


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 274 HHQHHPPMAARLQKQALQPESAH 342
           HH H PP +      A  PE  H
Sbjct: 52  HHSHMPPHSVFAANNAEFPEFVH 74


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 274 HHQHHPPMAARLQKQALQPESAH 342
           HH H PP +      A  PE  H
Sbjct: 52  HHSHMPPHSVFAANNAEFPEFVH 74


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 392 MDLGLIKREA 421
           +DLG+IKREA
Sbjct: 329 LDLGVIKREA 338


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -1

Query: 369 SNWVLVLMKMSRFRLKSLLLETCRH 295
           SNW +    + R+  + L ++ C H
Sbjct: 29  SNWAIYRPGIGRYAQEDLPVDLCTH 53


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 127 LLIFFKVTS*LCQNTYNIV 71
           +L+FFK  S  C N Y IV
Sbjct: 66  VLMFFKEASLYCFNYYVIV 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,369
Number of Sequences: 336
Number of extensions: 3096
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)