Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C22
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 124 8e-30
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 29 0.54
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 27 2.2
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 2.9
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 3.8
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 3.8
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 6.6
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.8
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 124 bits (300), Expect = 8e-30
Identities = 67/123 (54%), Positives = 87/123 (70%), Gaps = 1/123 (0%)
Frame = -3
Query: 616 MXRIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAEAD-KNDKAVKDLVILLYE 440
M RIMKAQALRDTS YM+++K EINP I+ L++K E + D++VKDL +LYE
Sbjct: 585 MERIMKAQALRDTSMSAYMSSRKTFEINPKSPIIAELKKKVEENGAEDRSVKDLATILYE 644
Query: 439 TALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRME 260
TALLSSGFTLD+P +A RI R+I LGL IDE+E +EE ++ V E +A+ S+ME
Sbjct: 645 TALLSSGFTLDDPSAYAQRINRLISLGLSIDEEEEAPIEEISTESV-AAENNAE--SKME 701
Query: 259 EVD 251
EVD
Sbjct: 702 EVD 704
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.54
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 334 IQVEEPASGDVPPLEGDADDASRMEEVD 251
IQ + P D PP++ DAD+ EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 610 RIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQK 497
R M + L + ++A KK LE+N IV TLRQ+
Sbjct: 120 RSMSSVVLASALSNNFIAQKKALEMNIMPKIVNTLRQE 157
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 11 ILH*AHFQKLLTLRTVTKQRYNIVSILAQL*RYFKKNQQKIILIIY*NN 157
IL AHF + T T + +++A + RY+ KNQ LII NN
Sbjct: 142 ILLSAHFDSVSTGYGATDDGMGVATVMA-IARYYAKNQPNRDLIININN 189
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/82 (19%), Positives = 39/82 (47%)
Frame = -3
Query: 502 QKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQVE 323
Q AE + + ++ +L+ + + + +D ++ + ++ I ED+ +VE
Sbjct: 22 QDAEENSQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTNAQNTIIEDKKRKVE 81
Query: 322 EPASGDVPPLEGDADDASRMEE 257
+P SG+ L + D+ + E+
Sbjct: 82 KPVSGNQFSLLSEEDEVDKKEK 103
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 514 ETLRQKAEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDE 344
E+ R+K E+DKN ++ K + E+ G + D V R+YR G+ +D+
Sbjct: 1281 ESNRRKLESDKNVQSNKYVNPFASESEFCRCGASADPYTVLFWRLYRNKPSGIKLDK 1337
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 290 LQWRHVSRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 400
L+W + RS N+N ++ Q HS+DT S+D+
Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 600 RLRLYVTHPQWDTWLRRSIWKSIL 529
+L +Y + QW+ W R WKSI+
Sbjct: 8 KLHIYASPEQWEKWSPR--WKSIV 29
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 28 FSKVAYITXSNKTKIQYCKYSGTIMTLL*KKSTENHFDYL 147
FSK++ I+ S I+YCK G + T +H D+L
Sbjct: 16 FSKISEISESVGRAIRYCKEDGKVEGC----ETASHVDFL 51
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 465 RILLSYCMKLPCCLLASRLMSPKSML---PVSIE*SNWVLVLMKMSRFRLKSL 316
+IL+ + PC +RL PK +L VS++ L ++SR L S+
Sbjct: 83 KILIKWIRTTPCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSV 135
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 248 LINFLHARCIISITLQWRHVSRSRLFNLNRLIFIN 352
L++ LHAR IS+ WR L + R + N
Sbjct: 1098 LMHVLHARIFISVLHLWRSADDLHLPYITRALLTN 1132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,440
Number of Sequences: 5004
Number of extensions: 49502
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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