Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C22
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 607 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 491
           +M   +L + +T+GYMA +  +  N    I E+++   E
Sbjct: 292 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 330


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 607 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 491
           +M   +L + +T+GYMA +  +  N    I E+++   E
Sbjct: 292 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 330


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 607 IMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKAE 491
           +M   +L + +T+GYMA +  +  N    I E+++   E
Sbjct: 231 VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARE 269


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 256 LPPCEMHHQHHP 291
           LPP    HQHHP
Sbjct: 312 LPPSYHPHQHHP 323


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 274 HHQHHPPMAARLQKQALQ-PESAHLHQY 354
           HHQH  P+A      A+Q   + H H +
Sbjct: 441 HHQHSTPLAHSSYPAAIQIGHTPHHHPH 468


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 343 LHQYQDPV*SFYRYGKHGLGAHQA*SQKTAGQFH 444
           LH   DP   +Y   K  L  H+A S+     +H
Sbjct: 713 LHYETDPCVRYYPRRKEWLYLHRARSESEFEMYH 746


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 481 SCRPPLSALMFPQLSDQD*FPNASSQPCIPLW 576
           S  PP SA   PQ ++    P     P IP++
Sbjct: 763 SIPPPPSAQNVPQNTNSQAIPRIPILPMIPVY 794



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 390  AWTWGSSSVKPEDSRAVSYNKI 455
            +WT G+ S + +  R V Y K+
Sbjct: 1079 SWTAGTVSQQKQKRRMVKYGKL 1100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,170
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)