Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C19
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0612 + 4902197-4902929,4903443-4904071 30 1.2
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 29 2.1
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 2.7
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 28 4.8
09_04_0559 + 18516732-18516746,18516893-18517330 28 4.8
06_03_0854 + 25400855-25403741,25406174-25407708 27 8.3
04_01_0550 - 7115728-7116065,7116793-7117843 27 8.3
03_05_0519 - 25131614-25134778 27 8.3
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 548 SAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLAD 426
+AA PN V ID+ AAA P + PEAA P L D
Sbjct: 25 AAAAAPNQVA-IDVVVVHHHGAAAAPGQQAPEAAPVPHLLD 64
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +1
Query: 40 TPLSLTWGSFTHICYS*SLALAAEHELM 123
TPL L WGSF CY SL EH M
Sbjct: 236 TPLQLQWGSFQSYCYR-SLIDGMEHIAM 262
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = -2
Query: 563 EGSADSAAIIPNMVKKIDL-------APTVESDAAAVPEIKTPEAADAPKLADNPVD--E 411
+GSA S I N + ++L AP + S AVP P A D P LAD P + E
Sbjct: 82 DGSAASFGISINHTRALELPGVCKVQAPPI-SQCTAVPT--PPPAPDTPTLADEPAETNE 138
Query: 410 DKPA 399
D+P+
Sbjct: 139 DEPS 142
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 584 KPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDK 405
K SA +EGS+ ++P + K+D P + I P+ + LA + ++DK
Sbjct: 464 KISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQDIERGGLAVDCGEDDK 523
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 584 KPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDK 405
+P+ +AE + + A P + + A E A E+K EAA AP + V+E
Sbjct: 80 EPAEPEAEPAKEEVAPEPAAAAEAE-AKEAEPAAQVAEEVKEEEAAPAPAAEEVKVEEAA 138
Query: 404 P 402
P
Sbjct: 139 P 139
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -2
Query: 581 PSATDAEGSADSAAIIPN----MVKKIDLAPTVESDAAAVPEIKTPEAA 447
PSA A A + ++ PN V LAP + AAA P + P AA
Sbjct: 618 PSAAPAPAPASAPSLEPNDIIAPVVSSTLAPGASAAAAAAPAVAPPAAA 666
>04_01_0550 - 7115728-7116065,7116793-7117843
Length = 462
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 500 TVESDAAAVPEIKTPEAADAPKLA 429
T+E+ A AVP + P++AD P +A
Sbjct: 362 TMEAIATAVPMVAMPQSADQPTIA 385
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 581 PSATDAEGSADSAAIIPNMVK--KIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDED 408
P A A+G AD+AA + K + + AA+ E K PEA K A+ E+
Sbjct: 150 PPAAPADGKADAAAEKKEAAEGGKEEKEKAPAAAAASAAEEKKPEAPAEEKKAEEAKKEE 209
Query: 407 K 405
K
Sbjct: 210 K 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,324,807
Number of Sequences: 37544
Number of extensions: 173927
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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