Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C16
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 163 2e-41
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 27 1.7
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 2.9
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 26 3.8
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 25 6.7
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 6.7
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 8.9
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 25 8.9
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 25 8.9
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 163 bits (396), Expect = 2e-41
Identities = 80/176 (45%), Positives = 109/176 (61%), Gaps = 12/176 (6%)
Frame = -2
Query: 622 RTWXVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRSRRNA 443
RTW +HWSLF FNH G D + ++F Y P YLN IQT CP +LRYL AV+ N++ N
Sbjct: 223 RTWLLHWSLFPLFNHANGCDTLCDLFFYTP-YLNTIQTSCPWLLRYLTVAVVTNQNNANQ 281
Query: 442 ------------LKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLT 299
++DLV++I QE Y Y DP+T FI LY DFE A+ L +C+ VL T
Sbjct: 282 KPRNPRQSYQRRMRDLVRIISQENYEYSDPVTSFISALYTEVDFEKAQHCLRECEEVLKT 341
Query: 298 DFFLIACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRN 131
DFFL++ + F+E AR ++ E +CRIH VIS+ +LA L M D A+ ++ L+ N
Sbjct: 342 DFFLVSLCDHFLEGARKLLAEAYCRIHSVISVDVLANKLEM--DSAQ--LIQLVEN 393
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 295 FFLIACLEEFV-ENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLD 119
FF I C F+ +N R R ++ I +L + L Q DE EC +++L +
Sbjct: 487 FFNILCKIMFIIDNNRASREYPIAREKEISLIYLLRDYLFHQIDEDECPVIDLYQVLNRL 546
Query: 118 AKIDSKLGHVV 86
K+D+ + +
Sbjct: 547 GKLDAGINQAI 557
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = -2
Query: 442 LKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFLIACLEEFV 263
L LVK++ E+YT R I E + ++ ++ + A+ +++ ++V T L+ L E
Sbjct: 309 LTQLVKLLDSESYTLRCAIIEVLANVVIDQIHDEAQNEMS--ESVPATVQSLMDLLSE-- 364
Query: 262 ENARLMIFETFCR 224
RL+ +CR
Sbjct: 365 ---RLLDISPYCR 374
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 46 QLIVDMAKEVVHPSPRD-LTWNRSSR-PGAHYGLSSRSSIP 162
++I D+ + S D T+++SSR PG H+G + RS P
Sbjct: 547 RIIEDLPDSKLKYSLEDQATYDQSSRYPGRHFGKTGRSHFP 587
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 22 SLPVNRFSQLIVDMAKEVVHPSPRDLTWNRSSR 120
++P+ + +++++AKEV+HP D R S+
Sbjct: 76 TMPIIQSFDVVINVAKEVLHPFRTDGRHYRDSK 108
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 524 ERHPDDVSPHPPLLGYCSNHKQVSQKCLEGPCES 423
E H +D+SPH P S H ++K E P S
Sbjct: 407 EPHWNDLSPHDPNDPSSSLHSNNAEKAAEVPLRS 440
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 326 QFSTGRFKVKINVKMFNELCDRISIGVSFLLNNFHKV 436
+FS R K +N+ + L R + V+ +++N H V
Sbjct: 64 EFSKSRIKGSVNLSLPATLIKRPAFSVARIISNLHDV 100
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 8.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 265 VENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKID 107
+E+ ++ + RIH +G+L L+M P E E ++ +LI AKID
Sbjct: 341 IEHNIRVVANYYSRIH-CSRLGVL---LDMSPSETEQFLCDLIAKHHFYAKID 389
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 8.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 265 VENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKID 107
+E+ ++ + RIH +G+L L+M P E E ++ +LI AKID
Sbjct: 341 IEHNIRVVANYYSRIH-CSRLGVL---LDMSPSETEQFLCDLIAKHHFYAKID 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,782
Number of Sequences: 5004
Number of extensions: 49649
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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