Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C16
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 246 1e-65
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 242 1e-64
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 201 3e-52
04_01_0012 - 210670-210759,210939-211008,211138-211235,211318-21... 30 1.3
06_03_0675 - 23428948-23431389 30 1.7
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 29 3.0
12_02_0982 - 25031778-25032122,25032388-25032534,25032693-250337... 28 6.9
12_02_1097 - 26059963-26061093 27 9.2
12_01_0828 + 7663958-7664114,7664345-7664479,7664588-7664680,766... 27 9.2
11_06_0179 + 20952070-20955228 27 9.2
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 27 9.2
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 246 bits (602), Expect = 1e-65
Identities = 114/213 (53%), Positives = 162/213 (76%), Gaps = 11/213 (5%)
Frame = -2
Query: 622 RTWXVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRSRRNA 443
R W +HWS+F+FFNH GR+ II++F ++ YLNAIQT PH+LRYLATAV++N+ RRN
Sbjct: 209 RIWLMHWSIFIFFNHENGRNGIIDLF-FQDRYLNAIQTNAPHLLRYLATAVVVNKRRRNM 267
Query: 442 LKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL-------- 287
LK+L+KVIQQE ++Y+DPITEF+E LYVN+DF+ A++KL +C+ V+L D FL
Sbjct: 268 LKELIKVIQQEQHSYKDPITEFLECLYVNYDFDGAQQKLIECEQVILNDPFLGKRIEEGN 327
Query: 286 ---IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDA 116
+ +EF+ENARL IFET+CRIH+ I IGML++ LNM DEAE WI+NL+RN++LDA
Sbjct: 328 FVTVPLRDEFLENARLFIFETYCRIHRCIDIGMLSQKLNMSYDEAELWIMNLVRNSKLDA 387
Query: 115 KIDSKLGHVVMGAQPLSPYQQLVERIDSLAVRS 17
KIDS G ++M ++ ++Q++E + +L +R+
Sbjct: 388 KIDSVSGTLIMTTNHVNIHEQVIESLKNLNMRT 420
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 242 bits (593), Expect = 1e-64
Identities = 112/216 (51%), Positives = 162/216 (75%), Gaps = 11/216 (5%)
Frame = -2
Query: 622 RTWXVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRSRRNA 443
R W +HWS+F+F+NH GR+ II++F ++ YLNAIQT PH+LRYLATAV++N+ RRN
Sbjct: 185 RIWLMHWSIFIFYNHENGRNGIIDLF-FQERYLNAIQTNAPHLLRYLATAVVVNKRRRNM 243
Query: 442 LKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL-------- 287
LK+L+KVIQQE ++Y+DPITEF+E L+VN+DF+ A++KL +C+ V+L D FL
Sbjct: 244 LKELIKVIQQEQHSYKDPITEFLECLFVNYDFDGAQQKLIECEEVILNDPFLGKRIEEGN 303
Query: 286 ---IACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDA 116
+ +EF+ENARL IFET+CRIH+ I IGML++ LNM+ DE E WI+NL+RN++LDA
Sbjct: 304 SITVPLRDEFLENARLFIFETYCRIHRSIDIGMLSQKLNMRYDEGELWIMNLVRNSKLDA 363
Query: 115 KIDSKLGHVVMGAQPLSPYQQLVERIDSLAVRSEAL 8
KIDS G ++M ++ ++Q +E + +L +R+ L
Sbjct: 364 KIDSVSGTLIMTTNHVNIHEQFIESLKNLNMRTSML 399
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 201 bits (491), Expect = 3e-52
Identities = 97/182 (53%), Positives = 135/182 (74%), Gaps = 11/182 (6%)
Frame = -2
Query: 529 YLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFD 350
YLNAIQT PH+LRYLA A+++NR RRN LK+LVKVIQQE ++Y+DPITEF+E LYVN D
Sbjct: 230 YLNAIQTDAPHLLRYLAAAIVVNRRRRNMLKELVKVIQQEQHSYKDPITEFLECLYVNHD 289
Query: 349 FEAARRKLNQCQAVLLTDFFL-----------IACLEEFVENARLMIFETFCRIHQVISI 203
F+ A++KL +C+ V+L D FL + +EF+ENARL+IFE++CRIH+ I I
Sbjct: 290 FDGAQQKLIECEQVILNDPFLGKRIEEGNSITVPLRDEFLENARLLIFESYCRIHRCIHI 349
Query: 202 GMLAENLNMQPDEAECWIVNLIRNARLDAKIDSKLGHVVMGAQPLSPYQQLVERIDSLAV 23
GML+E L M +EAE WI+NL+ N++LDAKID+ G ++M A + +QQ +E + +L +
Sbjct: 350 GMLSEKLKMSYNEAELWIMNLVSNSKLDAKIDTASGTLIMTANHANIHQQFIESLKNLDM 409
Query: 22 RS 17
R+
Sbjct: 410 RT 411
>04_01_0012 -
210670-210759,210939-211008,211138-211235,211318-211427,
211533-211683,212247-212391,212483-212749,212819-212957,
213036-213270
Length = 434
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 274 EEFVENARLM-IFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAKIDSKL 98
E+ + RLM + + R I + + L + DE E WIV I LD K+D +L
Sbjct: 317 EDCITKMRLMSLLDLSSRCAGEIPYHAIIDALKINDDEVEYWIVKAISCKILDCKVD-QL 375
Query: 97 GHVVM 83
V++
Sbjct: 376 NQVII 380
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 205 IGMLAENLNMQPDEAECWIVNLIRNARLDAKID 107
+ MLAEN+ +Q D WI N I ++RL+ + +
Sbjct: 740 VRMLAENVKLQEDSERSWITNFI-DSRLNGQFN 771
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 16 RISLPVNRFSQLIVDMAKEVVHPSPRDLTWNRSS 117
RIS NR QL+VD ++ P RD WN S
Sbjct: 142 RISTAKNRLKQLLVDALSKIAIPMARD-RWNGMS 174
>12_02_0982 -
25031778-25032122,25032388-25032534,25032693-25033718,
25033758-25034227,25034393-25034471
Length = 688
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 241 RSSVEHFRQTLPNRRLRKSQSKVQLGID 324
R +++HFR T PN +R V L +D
Sbjct: 659 RRAMQHFRMTTPNHAVRDRHVSVLLSLD 686
>12_02_1097 - 26059963-26061093
Length = 376
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -3
Query: 408 LTPIEILSQSSLNIFTLILTLKRP 337
L+P+E++ SLN++ ++TL+ P
Sbjct: 298 LSPLELIRAHSLNLYLQLITLRNP 321
>12_01_0828 +
7663958-7664114,7664345-7664479,7664588-7664680,
7667122-7668368
Length = 543
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 610 VHWSLFVFFNH--VKGRDLIIEMFLYKPLYLNAIQTM 506
+H F F H + G+D+I+++ +KP+ L A+ ++
Sbjct: 505 LHKKGFTFMRHTFLNGQDIIVDIDRFKPVLLRALNSL 541
>11_06_0179 + 20952070-20955228
Length = 1052
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -2
Query: 535 PLYLNAIQTMCPHI-LRY 485
P+YL+A TMCPH +RY
Sbjct: 156 PVYLHAFWTMCPHCQMRY 173
>01_06_1818 - 40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 244 IFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLDAK 113
++E + Q + G LAE LN++P + E W N R AR K
Sbjct: 1085 MYEAGSNLDQALKQG-LAEKLNIKPRQVEVWFQN--RRARTKHK 1125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,558,833
Number of Sequences: 37544
Number of extensions: 307524
Number of successful extensions: 773
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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