Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C16
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...   242   2e-64
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    31   0.51 
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        29   2.7  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score =  242 bits (592), Expect = 2e-64
 Identities = 114/207 (55%), Positives = 157/207 (75%), Gaps = 2/207 (0%)
 Frame = -2

Query: 622 RTWXVHWSLFVFFNHVKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLATAVIINRSR-RN 446
           R W +HW+LFV++N+ KGRD IIEMFL +  YLNAIQ + PH+LRYLA AV+ ++SR +N
Sbjct: 211 RAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRYLAVAVVTSKSRQKN 270

Query: 445 ALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFLIACLEEF 266
           +LKDLVKVI  E ++Y+DP+T+F+  LY+ +DF+ A+  L +C+ VL  DFFL A L +F
Sbjct: 271 SLKDLVKVIDIERHSYKDPVTDFLTCLYIKYDFDEAQEMLQKCEEVLSNDFFLTAVLGDF 330

Query: 265 VENARLMIFETFCRIHQVISIGMLAENLNMQPDEAECWIVNLIRNARLD-AKIDSKLGHV 89
            E+ARL+IFE FCRIHQ I+I MLA  LNM  +EAE WIV+LIR  R++ AKIDSKLG V
Sbjct: 331 RESARLLIFEMFCRIHQCITIEMLARRLNMSQEEAERWIVDLIRTYRIEGAKIDSKLGQV 390

Query: 88  VMGAQPLSPYQQLVERIDSLAVRSEAL 8
           VMG + +S ++Q++E    L +R++ +
Sbjct: 391 VMGVKSVSIHEQVMENTKRLTLRAQQI 417


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -2

Query: 544 LYKPLYLNAIQTMCPHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHL 365
           +YK  YL  +   CPHI+R +A A  ++  +   L  L++    E Y   D    F + L
Sbjct: 116 VYKKEYLADLMD-CPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDIL 174

Query: 364 YV 359
           ++
Sbjct: 175 FI 176


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 505 CPHILRYLATAVIINRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYV 359
           CPHI+R +A A  ++  +   L  L++    E Y   D    F + L++
Sbjct: 3   CPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFI 51


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -2

Query: 466 INRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL 287
           +  S +  +++    ++    T+   I E  +    NF+ E ARR+   C A+      +
Sbjct: 539 MKNSNQQVIRNHANAVESLQKTHETQIAEKNKEFERNFEEERARREAEVC-AMNNRHQKV 597

Query: 286 IACLEEFVENA 254
           +ACL+E +  A
Sbjct: 598 VACLDEKISEA 608


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -2

Query: 466 INRSRRNALKDLVKVIQQEAYTYRDPITEFIEHLYVNFDFEAARRKLNQCQAVLLTDFFL 287
           +  S +  +++    ++    T+   I E  +    NF+ E ARR+   C A+      +
Sbjct: 607 MKNSNQQVIRNHANAVESLQKTHETQIAEKNKEFERNFEEERARREAEVC-AMNNRHQKV 665

Query: 286 IACLEEFVENA 254
           +ACL+E +  A
Sbjct: 666 VACLDEKISEA 676


>AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical
           protein Y46H3A.4 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 497 HPPLLGYCSNHK 462
           HPPLLG+C+N K
Sbjct: 253 HPPLLGFCTNTK 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,513,401
Number of Sequences: 27780
Number of extensions: 276121
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)