Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C10
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 340 8e-94
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 32 0.53
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.8
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.8
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.6
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 340 bits (835), Expect = 8e-94
Identities = 158/238 (66%), Positives = 187/238 (78%)
Frame = -2
Query: 786 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 607
KKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+
Sbjct: 5 KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKIL 64
Query: 606 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 427
QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCK
Sbjct: 65 TQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCK 124
Query: 426 VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 247
VK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TG
Sbjct: 125 VKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTG 184
Query: 246 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGQG 73
GRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G G
Sbjct: 185 GRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAG 242
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3
Query: 74 GIRLTIAEERDKRIA 30
GIRL+IAEERDKR+A
Sbjct: 242 GIRLSIAEERDKRMA 256
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.9 bits (69), Expect = 0.53
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Frame = -1
Query: 367 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 191
HH + + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 190 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 95
AH G HG H H G GVH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH 586
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -1
Query: 232 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 95
A HH E H H G HGTH H GH G H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 509
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -1
Query: 184 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVH 95
H AH HG H RH E H+ H G H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH 422
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 223 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 95
HHR E AH G HGTH H E H+ H G H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = -1
Query: 253 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVH 95
HG G+ G H T L H H G HGTH H H+ HE G H
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH 698
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Frame = -1
Query: 367 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGACGHH--RVPRET 200
HH + + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 199 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVH 95
+ AH G HG H H H G H G H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH 651
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = -1
Query: 226 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 95
G H P H H HG H H ++ H+ GH H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = -1
Query: 223 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 95
HH P H G HG H H GH G H
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGH 673
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -2
Query: 483 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 352
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 265 LVYDHGRP*LGACGHHRVPRETSRLLRH 182
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 265 LVYDHGRP*LGACGHHRVPRETSRLLRH 182
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 326 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 490
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,206,669
Number of Sequences: 27780
Number of extensions: 436459
Number of successful extensions: 1325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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