Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C09
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...   130   1e-31
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    30   0.29 
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    27   2.0  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   4.7  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   8.1  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.1  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    25   8.1  

>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score =  130 bits (315), Expect = 1e-31
 Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 8/202 (3%)
 Frame = -2

Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEA-EILACEMIISYHPPIFAPLKSIVQRSWKERV 407
           LL  P+     + +LLT DLTE VA EA        I++YHP IF  LK+I     ++R 
Sbjct: 32  LLEAPFPRTNASSVLLTIDLTEKVAEEAISNKLVSSIVAYHPIIFRGLKAITMEDPQQRS 91

Query: 406 VSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAES--KPILQSNNPDF-----GAGR 248
           +  L  + I +YSPHT+ D+   GVNDWLA       +  K ++ +          G GR
Sbjct: 92  LLKLAAEGIHVYSPHTAVDAAVDGVNDWLAQGIAGGRNNIKSVVPTQQNSVMAEAEGYGR 151

Query: 247 LLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKGVDAD 68
           +  L     L + V + KELT L +V++    G  +   + +V+LCAGSG SV+   DAD
Sbjct: 152 ICELKIPTTLRELVQRAKELTGLQYVQVCAPNG--LDSHISKVSLCAGSGGSVVMNTDAD 209

Query: 67  LYLTGEMLHHDVLDATQKGITV 2
           LY TGE+ HH VL A  KGI+V
Sbjct: 210 LYFTGELSHHQVLAAMAKGISV 231


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 328 DWLASAFFVAESKPILQSNNPDFGAGRLLHLSSGIPLSDAVNKIKE 191
           D+L +A F  +  P+LQ   P+ G    LH  + + L D V++ +E
Sbjct: 4   DYLLTAIFDPDRGPVLQYQCPENGEASDLHFLAELMLPDRVHERRE 49


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 95  TSGSGT*RYPLNAVRHRLSLCDSDA 169
           T+GSG   YPL+ +R R+ +   +A
Sbjct: 243 TTGSGVASYPLDTIRRRMMMTSGEA 267


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 289 PILQSNNPDFGAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGK--SMTHSV 128
           P+++ + PDF  G    +     L D ++K ++  R     + + +GK   +TH +
Sbjct: 178 PLVRKDKPDFSNGHHDLIKQITELQDMLDKARDQARKKSRTVDILEGKVNELTHQL 233


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = -2

Query: 550 TKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALY 371
           TKI  T++LTE    + E+++ +   S    + AP K       K+R V+ L +  I+L+
Sbjct: 112 TKITDTSELTERERRKQELVSKKAEASRKMEVKAPAKES-----KKRKVNELSQDVISLH 166

Query: 370 SPHTS 356
           SP  S
Sbjct: 167 SPKES 171


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 439 SIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESK 290
           ++    W++  V++L +  IAL  P TS +     + D   SA  +  +K
Sbjct: 36  NLPSNKWQDIPVTFLHDNEIALIDPETSMEEASSILIDRDLSALPIVAAK 85


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 519 KMWLWKQKFW 490
           K+WLW  +FW
Sbjct: 106 KLWLWSSRFW 115


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 304 VAESKPILQSNNPDFGAGRLLHLSS 230
           V E+K +L +N+PD     L HL+S
Sbjct: 93  VVEAKKLLNANHPDHYGEGLSHLTS 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,034
Number of Sequences: 5004
Number of extensions: 50024
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)